Man pages for hochwagenlab/hwglabr2
Collection of R functions used in the Hochwagen Lab
| average_chr_signal | Average signal genome-wide and on each chromosome |
| binned_function | Apply function to bins of a numerical variable defined along... |
| compress_signal_track | Average signal variable over specified position windows |
| elapsed_time | Return elapsed time |
| facs_density_plot2 | FACS density plot |
| get_chr_coordinates | Get chromosome coordinates |
| get_dsb_hotspots | Get DSB hotspots |
| get_gff | Get GFF |
| get_intergenic_regions | Get intergenic regions |
| get_Red1_summits | Get Red1 ChIP-seq summits in WT |
| import_bedGraph | Import bedGraph file |
| import_wiggle | Import wiggle data generated by the lab's ChIP-seq analysis... |
| opening_act2 | Standard analysis of ChIP-seq experiments |
| opening_act2_batch_run | Batch run of 'opening_act2' function |
| signal_at_orf2 | Signal at all ORFs genome-wide normalized to constant length... |
| signal_flanking_rDNA | Signal flanking rDNA |
| signal_from_telomeres2 | Collect signal from telomeres for all chromosome arms |
| signal_mean_and_ci | Mean, SD, SEM, and confidence interval |
| signal_track_correlation | Compute correlation between signal track data for two samples |
| spikein_median_normalization | Spike-in normalization function |
| spikein_normalization_factor | Compute spike-in normalization factor |
