View source: R/opening_act2_batch_run.R
opening_act2_batch_run | R Documentation |
opening_act2
functionThis function will take a CSV file containing the path to multiple data
folders and argument labels and run opening_act2
function for
each data set in the file. It allows you to run a batch of data sets
automatically.
opening_act2_batch_run( input_data_file, ref_genome, output_path = "/Volumes/LabShare/HTGenomics/Opening_act/" )
input_data_file |
String indicating path to file containing instructions. The file must be in CSV format with the following columns (column names in the file must be reproduced exactly as below):
No default. |
ref_genome |
Character object specifying the genome version, to be used
as the
No default. |
output_path |
Character object with a valid path to directory to save
output files at. Defaults to
|
## Not run: opening_act_batch_run(input_data_file="~/Desktop/inputs.csv", ref_genome="SK1Yue") opening_act_batch_run(input_data_file="~/Desktop/inputs.csv", ref_genome="sacCer3", output_path='~/Desktop/') ## End(Not run)
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