Files in holgerman/HT12ProcessoR
Preprocessing Illuminas HT12 v4 data
.Rbuildignore
.gitignore
DESCRIPTION
HT12ProcessoR.Rproj
NAMESPACE
NEWS.md
R/Rprofile_hk_170124hk_packagevs.R
R/calcAnova.R
R/calcAnovaSentrixRunSpecialbatchViaMatrixEQTL2.R
R/calcInitialPCA.R
R/checkBatchEffects.R
R/checkExtractChipsamples.R
R/compareEsetExpressions.R
R/comparePCBeforeAfterPrePro.R
R/createExpressionSet.R
R/createGEdaten.R
R/createTextForMethods.R
R/filter4MinBatchsize.R
R/filterAtypicalExpressed.R
R/filterLowExpressed.R
R/filterTechnicallyFailed.R
R/getParam2.R
R/get_badExpressed_Inds.R
R/ggd.qqplot.R
R/hh.R
R/ht.R
R/makeCategorCovarDaten.R
R/makeCategorPseudoSNPDaten.R
R/makeMetrischPseudoSNPDaten.R
R/plotNormTransform.R
R/reformate_subgroup.R
R/removeBatchEffects.R
R/runMAtrixEQTLAnova.R
R/transformNormalize.R
R/transformNormalizeHT12object.R
R/visualizePreprocessing.R
R/writeFilesTosend.R
README.md
data/all_con.rda
data/allilmn.rda
data/annot_probes_ori.rda
data/annot_sample.rda
data/annotcon.rda
data/categmahal.rda
data/ercc_det.rda
data/ilmnAnnot014allgInfos.rda
inst/extdata/ControlProbeProfile_HSS106-HSS155.txt
inst/extdata/Einzelanalyse_nonorm_nobkgd_334-2184.txt
inst/extdata/Einzelanalyse_nonorm_nobkgd_HSS106-HSS155.txt
inst/extdata/Run12_ControlProbeProfile_590-651.txt
inst/extdata/Run12_SamplesTable_590-651.txt
inst/extdata/Run12_nonorm_nobkgd_590-651.txt
inst/extdata/SamplesTable_HSS106-HSS155.txt
inst/extdata/copy_csv_xls.swf
inst/extdata/custom.css
inst/extdata/input_parameter_010.txt
inst/extdata/renamingsamples.txt
man/calcInitialPCA.Rd
man/checkBatchEffects.Rd
man/checkExtractChipsamples.Rd
man/compareEsetExpressions.Rd
man/comparePCBeforeAfterPrePro.Rd
man/createExpressionSet.Rd
man/createTextForMethods.Rd
man/filter4MinBatchsize.Rd
man/filterAtypicalExpressed.Rd
man/filterLowExpressed.Rd
man/filterTechnicallyFailed.Rd
man/hello.Rd
man/hh.Rd
man/ht.Rd
man/plotNormTransform.Rd
man/removeBatchEffects.Rd
man/transformNormalizeHT12object.Rd
man/visualizePreprocessing.Rd
man/writeFilesTosend.Rd
versions/HT12ProcessoR_0.0.4.tar.gz
vignettes/HT12v4_Preprocessing_Example_Run.R
vignettes/HT12v4_Preprocessing_Example_Run.Rmd
vignettes/HT12v4_Preprocessing_Example_Run.html
