Description Usage Arguments Value
View source: R/visualizePreprocessing.R
Visualisation of control features and expression data before and after preprocessing in several plots. Thereby, raw data before preprocessing is log2 transformed for a more meaningful comparison
1 2 3 4 5 6 | visualizePreprocessing(
ht12object,
paramfile = NULL,
show_qcplots_individSamplelevel = "from_paramfile",
showPlots = T
)
|
ht12object |
A list object of class HT12prepro created with function filterAtypicalExpressed() |
paramfile |
Path to the file specifying parameters |
show_qcplots_individSamplelevel |
Show QC plots comparing expression values before / after preprocessing either binned on SentrixID ('FALSE') or binned on Sample ID ('TRUE')? If "from_paramfile", than the parameter will be read from the paramfile with the location of this file given in parameter paramfile. |
showPlots |
Show plots. If FALSE, plots are only stored in slot $dokuobjects_visualizePreprocessing |
A list object of class HT12prepro including additional slots $dokuobjects_visualizePreprocessing
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