calcInitialPCA | Initial PCA of attributes from sample files originatting from... |
checkBatchEffects | Identify remaining batch effects in expression data |
checkExtractChipsamples | Check Illumina HT12v4 expression data |
compareEsetExpressions | compareEsetExpressions |
comparePCBeforeAfterPrePro | Visualize PCA before and after preprocessing expression... |
createExpressionSet | Create an expressionset from Illumina HT12v4 data |
createTextForMethods | Create Text for Material and Methods to report preprocessing |
filter4MinBatchsize | Filter samples of a HT12prepro object for min batch size n>1 |
filterAtypicalExpressed | Filter samples with atypical expressoin data |
filterLowExpressed | Filter samples with atypical number of expressed genes and... |
filterTechnicallyFailed | Identify and filter samples with unusual combination of... |
hello | Hello, World! |
hh | Show first rows and columns |
ht | Show first and last rows |
plotNormTransform | plotNormTransform |
removeBatchEffects | Remove Batch effects from expressoin data of a HT12prepro... |
transformNormalizeHT12object | Normalize and transform expression sets included in a... |
visualizePreprocessing | Visualize expression data before and after preprocessing |
writeFilesTosend | Writes File used for follow up analyses in a folder |
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