Man pages for holgerman/HT12ProcessoR
Preprocessing Illuminas HT12 v4 data
| calcInitialPCA | Initial PCA of attributes from sample files originatting from... |
| checkBatchEffects | Identify remaining batch effects in expression data |
| checkExtractChipsamples | Check Illumina HT12v4 expression data |
| compareEsetExpressions | compareEsetExpressions |
| comparePCBeforeAfterPrePro | Visualize PCA before and after preprocessing expression... |
| createExpressionSet | Create an expressionset from Illumina HT12v4 data |
| createTextForMethods | Create Text for Material and Methods to report preprocessing |
| filter4MinBatchsize | Filter samples of a HT12prepro object for min batch size n>1 |
| filterAtypicalExpressed | Filter samples with atypical expressoin data |
| filterLowExpressed | Filter samples with atypical number of expressed genes and... |
| filterTechnicallyFailed | Identify and filter samples with unusual combination of... |
| hello | Hello, World! |
| hh | Show first rows and columns |
| ht | Show first and last rows |
| plotNormTransform | plotNormTransform |
| removeBatchEffects | Remove Batch effects from expressoin data of a HT12prepro... |
| transformNormalizeHT12object | Normalize and transform expression sets included in a... |
| visualizePreprocessing | Visualize expression data before and after preprocessing |
| writeFilesTosend | Writes File used for follow up analyses in a folder |
