genefilters: Filters for subsetting orthologous genes

In hr1912/phyExp: the R package for analyzing expression evolution based on RNA-seq data

Description

Two example filters for subsetting orthologous genes. 1. Housekeeping genes 2. Nervous System Development genes

Format

Two dataframes whose first column corresponds to Ensembl gene ids, second column corresponds to housekeeping gene symbol, and third column corresponds to Go ids related to Nervous System Development.

References

Brawand,D. et al. (2011) The evolution of gene expression levels in mammalian organs. Nature, 478, 343-348. Dorus S. et al. (2004) Accelerated evolution of nervous system genes in the origin of Homo sapiens. Cell 119:1027-1040. Eisenberg E, Levanon EY. (2013) Human housekeeping genes, revisited. Trends Genet 29:569-574.

Examples

data(genefilters)
head(tetrafilter)

hr1912/phyExp documentation built on July 13, 2019, 5:18 p.m.