Files in hr1912/phyExp
the R package for analyzing expression evolution based on RNA-seq data
.Rbuildignore
.Rd2pdf78883/Rd2.tex
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/TreeExp-package.R
R/aee.R
R/bootstrap.R
R/conservation.R
R/constructor.R
R/delta.R
R/distances.R
R/expdist.R
R/filters-data.R
R/gamma.R
R/map.R
R/nj.R
R/omega.R
R/parse.R
R/primatexp-data.R
R/print.R
R/tetraexp-data.R
R/trees-data.R
README.Rmd
README.md
_config.yml
data/genefilters.rda
data/primatexp.rda
data/tetraexp.rda
data/trees.rda
inst/doc/Ancestral_expression_estimation.R
inst/doc/Ancestral_expression_estimation.Rmd
inst/doc/Estimation_conservation.R
inst/doc/Estimation_conservation.Rmd
inst/doc/Expression_tree_building.R
inst/doc/Expression_tree_building.Rmd
inst/doc/TreeExp_basics.R
inst/doc/TreeExp_basics.Rmd
inst/extdata/tetraexp.length.ortholog.txt
inst/extdata/tetraexp.read.counts.raw.txt
man/TEconstruct.Rd
man/TreeExp-package.Rd
man/aee.Rd
man/boot.exphy.Rd
man/corrMatInv.Rd
man/delta.Rd
man/distances.Rd
man/estParaGamma.Rd
man/estParaQ.Rd
man/estParaWBayesian.Rd
man/estVarCov.Rd
man/estomega.Rd
man/estomega.sample.Rd
man/expdist.Rd
man/exptabTE.Rd
man/gamma.Rd
man/genefilters.Rd
man/map.Rd
man/nj.Rd
man/no0br.Rd
man/primatexp.Rd
man/print.taxaExp.Rd
man/print.taxonExp.Rd
man/tetraexp.Rd
man/trees.Rd
phyExp.Rproj
tools/format2treeexp.pl
vignettes/Ancestral_expression_estimation.R
vignettes/Ancestral_expression_estimation.Rmd
vignettes/Ancestral_expression_estimation.pdf
vignettes/Estimation_conservation.R
vignettes/Estimation_conservation.Rmd
vignettes/Estimation_conservation.pdf
vignettes/Expression_tree_building.R
vignettes/Expression_tree_building.Rmd
vignettes/Expression_tree_building.pdf
vignettes/TreeExp_basics.R
vignettes/TreeExp_basics.Rmd
vignettes/TreeExp_basics.pdf
