Man pages for hsinyenwu/RiboPlotR
Plot Periodicity of Ribosome Profiling Data
| count_CDS_reads | count_CDS_reads function to count reads according to CDS info |
| count_uORF_CDS_reads | count_uORF_CDS_reads function to count reads according to CDS... |
| firstInFramePSitePerExonNegative | firstInFramePSitePerExonNegative |
| firstInFramePSitePerExonPositive | firstInFramePSitePerExonPositive |
| gene.structure | Output gene structure information. |
| PLOTc | PLOTc plot RNA-seq and ribo-seq together for one datasets. |
| PLOTc2 | PLOTc2 |
| PLOTch2 | PLOTch2 |
| PLOTch3 | PLOTch3 |
| PLOTg | PLOTg plot RNA-seq and ribo-seq together for one datasets... |
| plotGeneModel | plot plotGeneModel |
| plotRanges | plotRanges is a function to plot GRanges |
| PLOTt | PLOTt, plot RNA-seq and ribo-seq separately. |
| PLOTt2 | PLOTt2, plot 2 sets of RNA-seq and ribo-seq for comparison |
| p_site_plot_genome | p_site_plot_genome plot RNA-seq and ribo-seq together for one... |
| p_site_plot_p | p_site_plot_p function to plot periodicity according to... |
| p_site_plot_p2 | p_site_plot_p2 is for plotting uORFs |
| p_site_Y_max | Identify highest value of riboseq reads in a give gene. |
| rna_bam.ribo | Function to get bam file path, ribo-seq p-site information... |
| rna_bam.ribo3 | rna_bam.ribo3 |
| uorf.structure | Output gene structure information for uORFs. |
