p_site_plot_p2: p_site_plot_p2 is for plotting uORFs

In hsinyenwu/RiboPlotR: Plot Periodicity of Ribosome Profiling Data

p_site_plot_p2 is for plotting uORFs

Description

p_site_plot_p2 plots uORFs one at a time and in three colors.

Usage

p_site_plot_p2(
  gene,
  uORF,
  uORF.isoform = NULL,
  ribo,
  CDSonly = TRUE,
  Extend = Extend,
  YLIM,
  Grey = FALSE
)

Arguments

gene	gene ID
uORF	uORF ID
uORF.isoform	numberic, uORF isoform, default use 1
ribo	riboseq file
CDSonly	TRUE or FALSE
Extend	Integer, plot more at both ends
YLIM	Integer, max value of Y-axis
Grey	Logical, darkgrey or not for Ribo/Degradome/CAGE reads

Value

a plot for the Ribo-seq reads with periodicity

hsinyenwu/RiboPlotR documentation built on Sept. 15, 2023, 12:29 a.m.