p_site_plot_p: p_site_plot_p function to plot periodicity according to...

In hsinyenwu/RiboPlotR: Plot Periodicity of Ribosome Profiling Data

p_site_plot_p function to plot periodicity according to transcript info

Description

Plot Ribo-seq peridicity in three colors according to the frame information.

Usage

p_site_plot_p(
  GeneName,
  isoform,
  ribo,
  CDSonly = FALSE,
  Extend = Extend,
  YLIM,
  axesQ,
  Grey = FALSE
)

Arguments

GeneName	Name of gene used
isoform	Which isoforms used
ribo	riboseq file
CDSonly	TRUE or FALSE
Extend	Integer, plot more at both ends
YLIM	Integer, max value of Y-axis
axesQ	PLOTc or PLOT, determine if the axes will be plotted
Grey,	Logical, darkgrey or not for Ribo/Degradome/CAGE reads

Value

a plot for the Ribo-seq reads with periodicity

hsinyenwu/RiboPlotR documentation built on Sept. 15, 2023, 12:29 a.m.