plotRanges: plotRanges is a function to plot GRanges

In hsinyenwu/RiboPlotR: Plot Periodicity of Ribosome Profiling Data

plotRanges is a function to plot GRanges

Description

Plot each isoform based on gtf/gff information

Usage

plotRanges(
  isoform,
  uORF = NULL,
  shortest3UTR,
  ybottom,
  main = deparse(substitute(x)),
  colCDS = "black",
  col3 = "white",
  col5 = "lightgrey",
  uORF.isoform = NULL
)

Arguments

isoform	Integer, the number of isoform
uORF	The name of the uORF
shortest3UTR	The plotGeneModel will provide this information automatically. Providing the shortest 3UTR range allows this function to decide how to plot the shape of the 3'UTR.
ybottom	The lower ylim for this function.
main	Title for the plot. The gene name is the default.
colCDS	Color for CDS
col3	Color for 3'UTR
col5	Color for 5'UTR
uORF.isoform	uORF isoform number

Value

plot each isoform

hsinyenwu/RiboPlotR documentation built on Sept. 15, 2023, 12:29 a.m.