Files in huang704/MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
DESCRIPTION
MSstatsTMT.Rproj
NAMESPACE
R/MQtoMSstatsTMTFormat.R
R/MSstatsTMT.R
R/OpenMStoMSstatsTMTFormat.R
R/PDtoMSstatsTMTFormat.R
R/SpectroMinetoMSstatsFormat.R
R/dataDoc.R
R/dataProcessPlotsTMT.R
R/groupComparisonTMT.functions.R
R/groupComparsionTMT.R
R/linearModel.functions.R
R/lmerTest.functions.R
R/proteinSummarization.R
R/proteinSummarization.functions.R
README.md
data/annotation.mine.rda
data/annotation.mq.rda
data/annotation.pd.rda
data/datalist
data/evidence.rda
data/input.pd.rda
data/proteinGroups.rda
data/quant.pd.msstats.rda
data/raw.mine.rda
data/raw.om.rda
data/raw.pd.rda
data/test.pairwise.rda
inst/NEWS.rd
man/MSstatsTMT.Rd
man/MaxQtoMSstatsTMTFormat.Rd
man/OpenMStoMSstatsTMTFormat.Rd
man/PDtoMSstatsTMTFormat.Rd
man/SpectroMinetoMSstatsTMTFormat.Rd
man/annotation.mine.Rd
man/annotation.mq.Rd
man/annotation.pd.Rd
man/dataProcessPlotsTMT.Rd
man/evidence.Rd
man/groupComparisonTMT.Rd
man/input.pd.Rd
man/proteinGroups.Rd
man/proteinSummarization.Rd
man/quant.pd.msstats.Rd
man/raw.mine.Rd
man/raw.om.Rd
man/raw.pd.Rd
man/test.pairwise.Rd
tests/.DS_Store
tests/testthat.R
tests/testthat/test-PDtoMSstatsTMTFormat.R
tests/testthat/test-groupComparisionTMT.R
tests/testthat/test-proteinSummarization.R
vignettes/MSstatsTMT.Rmd
