API for huayc09/SeuratExtend
SeuratExtend
| Global functions | |
|---|---|
| BarOfCluster | Man page |
| BuildAUCRank | Man page Source code |
| CalcMean | Source code |
| CalcScoreGeneral | Man page |
| CalcScoreGeneral_v3 | Man page |
| CalcStats | Man page Source code |
| CalcStats.Seurat | Man page Source code |
| CalcStats.default | Man page Source code |
| CalcTscore | Source code |
| CalcZscore | Source code |
| Cellrank.Compute | Man page Source code |
| Cellrank.Plot | Man page Source code |
| CheckIdent | Source code |
| ClusterDistrBar | Man page Source code |
| DimPlot2 | Man page Source code |
| DimPlot2_GetData | Source code |
| DimPlot2_LabelClusters | Source code |
| DimPlot2_PlotVars | Source code |
| DimPlot2_SelColCont | Source code |
| DimPlot2_SelColDisc | Source code |
| EnsemblToGenesymbol | Man page Source code |
| FeaturePlot3 | Man page Source code |
| FeaturePlot3.grid | Man page Source code |
| FilterGOTerms | Man page Source code |
| FilterGenesets | Source code |
| FilterReactomeTerms | Man page Source code |
| GSEAplot | Man page Source code |
| GeneSetAnalysis | Man page Source code |
| GeneSetAnalysisGO | Man page Source code |
| GeneSetAnalysisReactome | Man page Source code |
| GeneTrendCurve.Palantir | Man page Source code |
| GeneTrendCurve.Slingshot | Man page Source code |
| GeneTrendHeatmap.Palantir | Man page Source code |
| GeneTrendHeatmap.Slingshot | Man page Source code |
| GenesymbolToEnsembl | Man page Source code |
| GetAllChilrenGO | Source code |
| GetAllChilrenReactome | Source code |
| GetChilrenGO | Source code |
| GetChilrenReactome | Source code |
| GetEndTermsGO | Source code |
| GetEndTermsReactome | Source code |
| Heatmap | Man page Source code |
| HumanToMouseGenesymbol | Man page Source code |
| ImportPyscenicLoom | Man page Source code |
| MouseToHumanGenesymbol | Man page Source code |
| Palantir.Magic | Man page |
| Palantir.Pseudotime | Man page |
| Palantir.RunDM | Man page Source code |
| RenameGO | Man page Source code |
| RenameReactome | Man page Source code |
| RunBasicSeurat | Man page Source code |
| RunPalantirDiffusionMap | Man page Source code |
| RunSlingshot | Man page Source code |
| ScoreAndOrder | Man page |
| SearchDatabase | Man page Source code |
| SearchPathways | Man page Source code |
| Seu2Adata | Man page Source code |
| Seu2Loom | Man page Source code |
| Seu2Matr | Source code |
| StackedViolin | Man page |
| StackedViolin_v3 | Man page |
| UniprotToGenesymbol | Man page Source code |
| VlnPlot2 | Man page Source code |
| VlnPlot2.Seurat | Man page Source code |
| VlnPlot2.default | Man page Source code |
| VlnPlot2_Calc | Source code |
| VlnPlot2_Plot | Source code |
| VlnPlot2_SelColDisc | Source code |
| WaterfallPlot | Man page Source code |
| WaterfallPlot.Seurat | Man page Source code |
| WaterfallPlot.default | Man page Source code |
| WaterfallPlot_Calc | Source code |
| WaterfallPlot_v3 | Man page |
| adata.AddDR | Man page Source code |
| adata.AddMetadata | Man page Source code |
| adata.Load | Man page Source code |
| adata.LoadLoom | Man page Source code |
| adata.Save | Man page Source code |
| add_plot_layer | Source code |
| ang | Source code |
| biomartConvertGeneral | Source code |
| build_base_plot | Source code |
| calcAUC_matrix | Source code |
| check_method | Source code |
| check_pkg_version | Source code |
| check_spe | Source code |
| color_iwh | Man page Source code |
| color_pro | Man page Source code |
| compute_gradient | Source code |
| create_condaenv_seuratextend | Man page Source code |
| create_temp_dir | Source code |
| extract_pseudotime_data | Source code |
| feature_percent | Man page Source code |
| getAUC | Source code |
| getGOdatabase | Source code |
| getRanking | Source code |
| getReactomedatabase | Source code |
| import | Source code |
| is_continuous | Source code |
| is_windows | Source code |
| load_condaenv | Source code |
| message_only_once | Source code |
| normalizePathWindows | Source code |
| perform_gam_analysis | Source code |
| process_magic_and_set_assay | Source code |
| r_vector_to_py | Source code |
| rescale | Source code |
| ryb2rgb | Man page Source code |
| save_colors | Man page Source code |
| scVelo.Plot | Man page |
| scVelo.RunBasic | Man page |
| scVelo.SeuratToAnndata | Man page Source code |
| scVelo.SeuratToLoom | Man page Source code |
| sca | Source code |
| scale_color_cont_auto | Source code |
| scale_color_disc_auto | Source code |
| scale_fill_cont_auto | Source code |
| scale_fill_disc_auto | Source code |
| seg | Source code |
| seg.x | Source code |
| trim_data_by_pseudotime | Source code |
| vlnplot2_Stat | Source code |
| vlnplot2_Stat_add_y | Source code |
