add_annotation: Add information to an annotation data structure

In huebschm/YAPSA: Yet Another Package for Signature Analysis

Description

Function to iteratively add information to an annotation data structure as needed for HeatmapAnnotation and especially for annotation_exposures_barplot

Usage

add_annotation(in_annotation_col, in_annotation_df, in_attribution_vector,
  in_colour_vector, in_name)

Arguments

in_annotation_col	List, every element of which refers to one layer of annotation. List elements are structures corresponding to named colour vectors
in_annotation_df	Data frame, every column of which corresponds to a layer of annotation. It has as many rows as there are samples, every entry in a row corresponding to the attribute the samples has for the corresponding layer of annotation. The factor levels of a column of in_annotation_df correspond to the names of the corresponding element in in_annotation_col
in_attribution_vector	A vector which is going to be cbinded to in_annotatiin_df, carrying the annotation information of the new layer to be added
in_colour_vector	Named vector of colours to be attributed to the new annotation
in_name	Name of the new layer of annotation

Value

A list with entries

• annotation_col: A list as in in_annotation_col but with one additional layer of annotation

• annotation_df: A data frame as in in_annotation_df but with one additional layer of annotation

Examples

 NULL
 

huebschm/YAPSA documentation built on May 17, 2019, 9:11 p.m.