README.md

In hugheylab/phers: Calculate Phenotype Risk Scores

phers

phers is an R package for calculating phenotype risk scores, which quantify the extent to which a person's clinical diagnoses resemble a given Mendelian disease. For details on the R package, see Aref et al. (2022). For details on the original application of phenotype risk scores, see Bastarache et al. (2018).

Installation

Option 1: CRAN

install.packages('phers')

Option 2: Hughey Lab Drat Repository

1. Install BiocManager.

   r if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager')

2. If you use RStudio, go to Tools → Global Options... → Packages → Add... (under Secondary repositories), then enter:

   • Name: hugheylab
   • Url: https://hugheylab.github.io/drat/

   You only have to do this once. Then you can install or update the package by entering:

   r BiocManager::install('phers')

   Alternatively, you can install or update the package by entering:

   r BiocManager::install('phers', site_repository = 'https://hugheylab.github.io/drat/')

Usage

Check out the reference documentation.

hugheylab/phers documentation built on April 24, 2023, 10:26 a.m.