preCalcWeights: Pre-calculated weights for calculating phenotype risk scores
In hugheylab/phers: Calculate Phenotype Risk Scores
preCalcWeights R Documentation
Pre-calculated weights for calculating phenotype risk scores
Description
The weights are based on EHR data from the Vanderbilt University Medical
Center Synthetic Derivative (SD) and ICD-phecode map version 1.2 and are
calculated using the "prevalence" method.
Usage
preCalcWeights
Format
A data.table with the following columns:
-
phecode: Character vector of phecodes
-
prev: Numeric vector of prevalences, i.e., fraction of subjects in the SD
that have at least one occurrence of the given phecode
-
w: Numeric vector of weights, calculated as -log10(prev)
See Also
getWeights()
hugheylab/phers documentation built on April 24, 2023, 10:26 a.m.
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| preCalcWeights | R Documentation |
Pre-calculated weights for calculating phenotype risk scores
Description
The weights are based on EHR data from the Vanderbilt University Medical Center Synthetic Derivative (SD) and ICD-phecode map version 1.2 and are calculated using the "prevalence" method.
Usage
preCalcWeights
Format
A data.table with the following columns:
-
phecode: Character vector of phecodes -
prev: Numeric vector of prevalences, i.e., fraction of subjects in the SD that have at least one occurrence of the given phecode -
w: Numeric vector of weights, calculated as-log10(prev)
See Also
getWeights()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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