filter_genes: Filter genes base on avarage counts

In huipan1973/ezscrnaseq: What the Package Does (One Line, Title Case)

Filter genes base on avarage counts

Description

Filter genes that have avarage counts fewer than cutoff)

Usage

filter_genes(
  sce,
  cutoff = 0,
  ncores = 1,
  prefix = NULL,
  plot = TRUE,
  write = TRUE,
  verbose = TRUE
)

Arguments

sce	A SingleCellExperiment object containing expression values, usually counts.
cutoff	The cutoff of avarage counts for filtering. cutoff should be >= 0.
ncores	Number of cores.
prefix	Prefix for file name for the QC metrics histograms.
plot	TRUE/FASLE for whether plot the QC metrics histograms.
write	TRUE/FASLE for whether write the table of filtered cells.
verbose	TRUE/FASLE for specifying whether diagnostics should be printed to screen.

Value

A SingleCellExperiment object.

huipan1973/ezscrnaseq documentation built on July 12, 2022, 9:36 p.m.