find_pairs: Cell cycle training step of the pair-based prediction

In huipan1973/ezscrnaseq: What the Package Does (One Line, Title Case)

Cell cycle training step of the pair-based prediction

Description

Cell cycle pairs creation using scran sandbag.

Usage

find_pairs(sce, G1, S, G2M, genes = NULL)

Arguments

sce	A SingleCellExperiment object containing expression values, usually counts.
G1	Vector of column indices of G1 genes.
S	Vector of column indices of S genes.
G2M	Vector of column indices of G2M genes.
genes	Ensembl gene IDs for genes in sce. If genes are set to NULL , genes will be taken from sce .

Details

Genes in all three phases are required.

Minimum 1000 genes should overlap between sce and genes.

Function throws error if no pairs are found

Value

A list containing training gene pairs for G1, S, and G2M phase.

huipan1973/ezscrnaseq documentation built on July 12, 2022, 9:36 p.m.