artificial_bacteriaIPM: Artificial dataset generated from the bacterial resistance...

In hunansona/ed4bhm: Empirical Determinacy for Bayesian Hierarchical Models

Artificial dataset generated from the bacterial resistance data

Description

Artificial dataset generated from the bacterial resistance data corresponding to the data for antibiotic Imipenem (IPM).

Usage

data(artificial_bacteriaIPM)

Format

A data frame with 38 observations on the following 23 variables.

IZD

numeric, Inhibition zone diameter (IZD) values in (mm), which can attain values between 3 (mm) and 40 (mm)

nipmesbl

numeric, counts of the ESBL isolates for the antibiotic IPM

nipmesb1, nipmesb2, nipmesb3, nipmesb4, nipmesb5, nipmesb6, nipmesb7, nipmesb8, nipmesb9, nipmesb10, nipmesb11, nipmesb12, nipmesb13, nipmesb14, nipmesb15, nipmesb16, nipmesb17, nipmesb18, nipmesbl19

numeric, artificial counts of the ESBL isolates for the antibiotic IPM

nipmwt

numeric, counts of the wild-type isolates for the antibiotic IPM

scIZD

numeric, scaled IZD values to have mean 0 and standard deviation 1

Details

We have generates artificial dataset given the data corresponding to antibiotic IPM in bacterial_resistance. Artificially generated columns nipmesbl1 … nipmesbl19 ensure different separation levels in the data.

Source

Hunanyan, S. and Kazantzidis, G. and Rue, H. and Roos, M (2021). Empirical determinacy in the Bayesian logistic regression in the presence of separation in the data (in preparation).

References

G. Valsesia, M. Hombach, F.P. Maurer, P. Courvalin, M. Roos, and E.C. Boettger. The resistant-population cutoff (RCOFF): a new concept for improved characterization of antimicrobial susceptibility patterns of non-wild-type bacterial populations. Journal of Clinical Microbiology, 53(6):1806-1811, 2015a.

G. Valsesia, M. Roos, E.C. Boettger, and M. Hombach. A statistical approach for determination of disk diffusion-based cutoff values for systematic characterization of wild-type and non-wild-type bacterial populations in antimicrobial susceptibility testing. Journal of Clinical Microbiology, 53(6):1812-1822, 2015b.

See Also

bacterial_resistance

Examples

data(artificial_bacteriaIPM)
str(artificial_bacteriaIPM)

hunansona/ed4bhm documentation built on June 15, 2022, 6:42 p.m.