Files in huqiwen0313/HM_splicing
Random forest based approach for detecting regulatory histone marks associated with splicing patterns
.Rbuildignore
.gitignore
DESCRIPTION
HMSplicing.Rproj
LICENSE_BSD-3.md
NAMESPACE
R/data.processing.R
R/model.R
R/vis.R
README.md
codes/Achived/AS.summary.R
codes/Achived/HM.feature.extraction.R
codes/Achived/HM.gene.exp.integraion.R
codes/Achived/HM.gene.exp.model.R
codes/Achived/HM.gene.exp.model.summary.R
codes/Achived/HM.model.class.exp.R
codes/Achived/HM.model.expression.R
codes/Achived/SE.files.R
codes/Achived/correlaion.R
codes/Achived/example.R
codes/Achived/iRF.test.R
codes/Achived/logit.interaction.R
codes/Achived/model.R
codes/Achived/viz.R
codes/count.hm.reads.pl
codes/dependencies.R
codes/download.sample.R
data/encode_data_table/adult.mouse.heart.file.tsv
data/encode_data_table/adult.mouse.kidney.file.tsv
data/encode_data_table/adult.mouse.liver.file.tsv
data/encode_data_table/emryo.mouse.forebrain.file.tsv
data/encode_data_table/emryo.mouse.heart.file.tsv
data/encode_data_table/emryo.mouse.limb.file.tsv
data/encode_data_table/emryo.mouse.liver.file.tsv
data/encode_data_table/emryo.mouse.midbrain.file.tsv
data/encode_data_table/list.txt
example_data/H3K4me1.canonical.exon.signal
example_data/alldata.logit.perf.gain.vs.loss.txt
example_data/alldata.rf.perf.gain.vs.loss.txt
example_data/allsample.reads.txt
example_data/forebrain.12.5.vs.11.5.rmast.out
example_data/forebrain.13.5day.HMfeatures.txt
example_data/forebrain.mixed.12.5day.H3K4me1.1.bam.sam.hm.signal
figs/H3K4me1.hm.distr.png
figs/H3K4me1.sampled.distr.png
figs/RF.performance.example.png
figs/cover.figure.png
figs/forebrain.impfeatures.png
figs/interaction.example.png
figs/performance.comp.example.png
license_CC0.md
man/HMflankingSig.Rd
man/Visfeatures.Rd
man/VisfeaturesMarks.Rd
man/basic.analysis.md
man/classify_splicing_code.Rd
man/getCoverage.Rd
man/iRFModel.Rd
man/model.Rd
man/modelPerformance.Rd
man/model_exp.Rd
man/plotCoverage.Rd
man/plotFeatureImp.Rd
man/plotInteraction.Rd
man/plotModelPerformance.Rd
man/plotRFperformance.Rd
util/core.R
util/model.R
util/vis.R
