plotCoverage: This function is used to visualize the chip-seq distribution...

In huqiwen0313/HM_splicing: Random forest based approach for detecting regulatory histone marks associated with splicing patterns

Description

This function is used to visualize the chip-seq distribution of flanking regions

Usage

plotCoverage(
  HM_file,
  total_reads,
  sample_info,
  subsampleCanonical = F,
  CanonicalFile = NULL
)

Arguments

HM_file:	files contain the chip-seq signals in the flanking region of AS exons and AS exon class
total_reads:	number of total reads in the sample
sample_info:	vector contains sample information (tissue, markers and time points)
subsampleCanonical:	subsample signals from canonical exons
CanonicalFile:	file contains chip-seq signal from canonical exons

Value

plot of distribution of hPTMs in the exon flanking regions

huqiwen0313/HM_splicing documentation built on May 5, 2020, 12:36 p.m.