HMflankingSig: This function is used to extract the hPTM signal in the exon...
In huqiwen0313/HM_splicing: Random forest based approach for detecting regulatory histone marks associated with splicing patterns
Description
Usage
Arguments
Value
View source: R/data.processing.R
Description
This function is used to extract the hPTM signal in the exon flanking regions
or rMATS HM files and calssify alternative spliced exons into different
categories (splicing codes): gain (0), loss (1), High (2) and Low (3)
Usage
1
HMflankingSig(HM_file, marker, total_reads)
Arguments
HM_file:
processed HM rMAST file with splicing categories
marker:
hPTM information, e.g. H3K36me3
total_reads:
total reads in sample
Value
file contains hPTM signal in the exon flanking regions
huqiwen0313/HM_splicing documentation built on May 5, 2020, 12:36 p.m.
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Description Usage Arguments Value
View source: R/data.processing.R
Description
This function is used to extract the hPTM signal in the exon flanking regions or rMATS HM files and calssify alternative spliced exons into different categories (splicing codes): gain (0), loss (1), High (2) and Low (3)
Usage
1 | HMflankingSig(HM_file, marker, total_reads)
|
Arguments
HM_file: |
processed HM rMAST file with splicing categories |
marker: |
hPTM information, e.g. H3K36me3 |
total_reads: |
total reads in sample |
Value
file contains hPTM signal in the exon flanking regions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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