Man pages for huqiwen0313/HM_splicing
Random forest based approach for detecting regulatory histone marks associated with splicing patterns
| classify_splicing_code | This function take the input of rMATS... |
| getCoverage | caculate read coverage in the flanking region of target exons |
| HMflankingSig | This function is used to extract the hPTM signal in the exon... |
| iRFModel | run iterative random forest model based on 5-fold CV |
| model | run logistic and random forest model |
| model_exp | random forest regression model to identify HMs asscociated... |
| modelPerformance | Evaluate model performance |
| plotCoverage | This function is used to visualize the chip-seq distribution... |
| plotFeatureImp | This function is used to plot the top important markers based... |
| plotInteraction | plot interaction of histone markers |
| plotModelPerformance | visualize the performance of random forest and logistic... |
| plotRFperformance | plot the performance of random forest model |
| Visfeatures | This function is used to visulize the importance features for... |
| VisfeaturesMarks | This function is used to visulize the importance markers for... |
