Man pages for hxin/topOnto
ontology enrichment analysis
| annFUN | Functions which map gene identifiers to GO terms |
| classicCount-class | Class "classicCount" |
| classicExpr-class | Class "classicExpr" |
| classicScore-class | Class "classicScore" |
| dagFunctions | Utility functions to work with Directed Acyclic Graphs (DAG) |
| diagnosticMethods | Diagnostic functions for topONTdata and topGOresult objects. |
| elimCount-class | Classes "elimCount" and "weight01Count" |
| elimExpr-class | Class "elimExpr" |
| elimScore-class | Classes "elimScore" and "weight01Score" |
| getPvalues | Convenient function to compute p-values from a gene... |
| getSigGroups | Interfaces for running the enrichment tests |
| GOTests | Gene set tests statistics |
| groupStats-class | Class "groupStats" |
| inducedGraph | The subgraph induced by a set of nodes. |
| init | init methods |
| ONTdata | A toy example of a list of gene identifiers and their... |
| parentChild-class | Classes "parentChild" and "pC" |
| printGraph-methods | Visualisation functions |
| topGOdata-class | Class "topGOdata" |
| topGOresult-class | Class "topGOresult" |
| topONTdata-class | Class "topONTdata" |
| topOnto-package | Enrichment analysis for Gene Ontology |
| topONTresult-class | Class "topGOresult" |
| weightCount-class | Class "weightCount" |
