Files in hxin/topOnto

ontology enrichment analysis

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/AllClasses.R R/doc_ONTdataR.R R/gsea.R R/package.R R/topGOalgo.R R/topGOannotations.R R/topGOfunctions.R R/topGOgraph.R R/topGOmethods.R R/topGOtests.R R/topGOviz.R R/zzz.R README.md

Readme

data/ONTdata.RData

inst/NEWS

inst/doc/topOnto.Rnw

inst/doc/topOnto.pdf

inst/doc/topOnto.synctex.gz

inst/doc/workflowDisent.pdf

inst/extdata/annotation/fly/fly_gene2HDO_many2many

inst/extdata/annotation/fly/fly_gene2HDO_many2many_confident

inst/extdata/annotation/fly/fly_gene2HDO_one2many

inst/extdata/annotation/fly/fly_gene2HDO_one2many_confident

inst/extdata/annotation/fly/fly_gene2HDO_one2many_confident.bk

inst/extdata/annotation/fly/fly_gene2HDO_one2many_weighted_g2t.Rds

inst/extdata/annotation/fly/fly_gene2HDO_one2many_weighted_t2g.Rds

inst/extdata/annotation/fly/fly_gene2HDO_one2one

inst/extdata/annotation/fly/fly_gene2HDO_one2one_confident

inst/extdata/annotation/fly/test

inst/extdata/annotation/fly/text

inst/extdata/annotation/human_gene2GO

inst/extdata/annotation/human_gene2HDO

inst/extdata/annotation/human_gene2HDO_confident

inst/extdata/annotation/human_gene2HDO_g

inst/extdata/annotation/human_gene2HDO_o

inst/extdata/annotation/human_gene2HDO_v

inst/extdata/annotation/human_gene2HDO_weighted_g2t.Rds

inst/extdata/annotation/human_gene2HDO_weighted_t2g.Rds

inst/extdata/annotation/human_gene2HDO_weighted_t2g.incomplete.Rds

inst/extdata/annotation/human_gene2HPO

inst/extdata/annotation/human_gene2HPO_confident

inst/extdata/annotation/human_gene2HPO_g

inst/extdata/annotation/human_gene2HPO_o

inst/extdata/annotation/human_gene2HPO_v

inst/extdata/annotation/human_gene2chromosome

inst/extdata/annotation/human_gene2proteinclass

inst/extdata/annotation/human_gene2rectome

inst/extdata/annotation/human_reactome2gene

inst/extdata/annotation/old_data_before_20151204update/fly/fly_gene2GO_ensembl

inst/extdata/annotation/old_data_before_20151204update/fly/fly_gene2HDO_many2many

inst/extdata/annotation/old_data_before_20151204update/fly/fly_gene2HDO_one2many

inst/extdata/annotation/old_data_before_20151204update/fly/fly_gene2HDO_one2one

inst/extdata/annotation/old_data_before_20151204update/fly/fly_gene2HPO_many2many

inst/extdata/annotation/old_data_before_20151204update/fly/fly_gene2HPO_one2many

inst/extdata/annotation/old_data_before_20151204update/fly/fly_gene2HPO_one2one

inst/extdata/annotation/old_data_before_20151204update/human_HDO2gene

inst/extdata/annotation/old_data_before_20151204update/human_gene2GO

inst/extdata/annotation/old_data_before_20151204update/human_gene2HDO

inst/extdata/annotation/old_data_before_20151204update/human_gene2HDO_bk

inst/extdata/annotation/old_data_before_20151204update/human_gene2HDO_confident

inst/extdata/annotation/old_data_before_20151204update/human_gene2HDO_g

inst/extdata/annotation/old_data_before_20151204update/human_gene2HDO_o

inst/extdata/annotation/old_data_before_20151204update/human_gene2HDO_v

inst/extdata/annotation/old_data_before_20151204update/human_gene2HPO

inst/extdata/annotation/old_data_before_20151204update/human_gene2HPO_confident

inst/extdata/annotation/old_data_before_20151204update/human_gene2HPO_g

inst/extdata/annotation/old_data_before_20151204update/human_gene2HPO_o

inst/extdata/annotation/old_data_before_20151204update/human_gene2HPO_v

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_many2many

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_many2many_score

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_one2many

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_one2many_score

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_one2many_score_g2t.Rds

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_one2many_score_t2g.Rds

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_one2one

inst/extdata/annotation/old_data_before_20160110update/fly/fly_gene2HDO_one2one_score

inst/extdata/annotation/old_data_before_20160110update/human_gene2HDO

inst/extdata/annotation/old_data_before_20160110update/human_gene2HDO_g

inst/extdata/annotation/old_data_before_20160110update/human_gene2HDO_o

inst/extdata/annotation/old_data_before_20160110update/human_gene2HDO_score

inst/extdata/annotation/old_data_before_20160110update/human_gene2HDO_v

inst/extdata/annotation/old_data_before_20160110update/human_gene2HDO_weighted_g2t.Rds

inst/extdata/annotation/old_data_before_20160110update/human_gene2HDO_weighted_t2g.Rds

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_many2many

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_many2many_confident

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_one2many

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_one2many_confident

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_one2many_weighted_g2t.Rds

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_one2many_weighted_t2g.Rds

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_one2one

inst/extdata/annotation/old_data_before_20160128update/fly/fly_gene2HDO_one2one_confident

inst/extdata/annotation/old_data_before_20160128update/human_gene2HDO

inst/extdata/annotation/old_data_before_20160128update/human_gene2HDO_g

inst/extdata/annotation/old_data_before_20160128update/human_gene2HDO_o

inst/extdata/annotation/old_data_before_20160128update/human_gene2HDO_score

inst/extdata/annotation/old_data_before_20160128update/human_gene2HDO_v

inst/extdata/annotation/old_data_before_20160128update/human_gene2HDO_weighted_g2t.Rds

inst/extdata/annotation/old_data_before_20160128update/human_gene2HDO_weighted_t2g.Rds

inst/extdata/annotation/old_data_before_20160128update/human_gene2HPO

inst/extdata/annotation/old_data_before_20160128update/human_gene2HPO_g

inst/extdata/annotation/old_data_before_20160128update/human_gene2HPO_o

inst/extdata/annotation/old_data_before_20160128update/human_gene2HPO_score

inst/extdata/annotation/old_data_before_20160128update/human_gene2HPO_v

inst/extdata/annotation/readme.txt

inst/extdata/genelist/ARC

inst/extdata/genelist/age

inst/extdata/genelist/testList

inst/extdata/ontology/Chromosome.obo

inst/extdata/ontology/GOBP20160205.obo

inst/extdata/ontology/GOCC20160205.obo

inst/extdata/ontology/GOMF20160205.obo

inst/extdata/ontology/GSEA/Datasets/Gender.cls

inst/extdata/ontology/GSEA/Datasets/Gender.gct

inst/extdata/ontology/GSEA/Datasets/Leukemia.cls

inst/extdata/ontology/GSEA/Datasets/Leukemia.gct

inst/extdata/ontology/GSEA/Datasets/Lung_Bost_maxed_common_Mich_Bost.gct

inst/extdata/ontology/GSEA/Datasets/Lung_Boston.cls

inst/extdata/ontology/GSEA/Datasets/Lung_Boston.gct

inst/extdata/ontology/GSEA/Datasets/Lung_Mich_maxed_common_Mich_Bost.gct

inst/extdata/ontology/GSEA/Datasets/Lung_Michigan.cls

inst/extdata/ontology/GSEA/Datasets/Lung_Michigan.gct

inst/extdata/ontology/GSEA/Datasets/Lung_Stanford.cls

inst/extdata/ontology/GSEA/Datasets/Lung_Stanford.gct

inst/extdata/ontology/GSEA/Datasets/P53.cls

inst/extdata/ontology/GSEA/Datasets/P53.gct

inst/extdata/ontology/GSEA/GSEA.1.0.R

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.SUMMARY.RESULTS.REPORT.f.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.SUMMARY.RESULTS.REPORT.m.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.all.leading.genes.f.gmt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.all.leading.genes.m.gmt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr10q11.plot.f.8.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr10q11.report.f.8.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr11p11.plot.f.20.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr11p11.report.f.20.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr11q22.plot.m.7.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr11q22.report.m.7.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr12q23.plot.f.5.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr12q23.report.f.5.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr13q12.plot.f.17.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr13q12.report.f.17.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr13q13.plot.m.6.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr13q13.report.m.6.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr13q14.plot.f.6.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr13q14.report.f.6.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr16p12.plot.f.15.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr16p12.report.f.15.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr17p11.plot.m.14.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr17p11.report.m.14.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr1p34.plot.f.16.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr1p34.report.f.16.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr1q24.plot.m.9.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr1q24.report.m.9.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr20p12.plot.f.14.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr20p12.report.f.14.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr21.plot.m.15.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr21.report.m.15.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr21q22.plot.m.13.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr21q22.report.m.13.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q14.plot.f.18.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q14.report.f.18.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q24.plot.m.12.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q24.report.m.12.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q31.plot.f.9.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q31.report.f.9.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q32.plot.m.8.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr2q32.report.m.8.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr3p25.plot.m.17.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr3p25.report.m.17.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr3q29.plot.f.12.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr3q29.report.f.12.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr4q13.plot.m.19.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr4q13.report.m.19.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr4q22.plot.f.10.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr4q22.report.f.10.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr5p13.plot.m.10.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr5p13.report.m.10.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr5p15.plot.m.11.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr5p15.report.m.11.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr5q14.plot.f.19.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr5q14.report.f.19.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr6q15.plot.f.2.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr6q15.report.f.2.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr6q24.plot.m.5.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr6q24.report.m.5.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr7p21.plot.m.20.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr7p21.report.m.20.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8p11.plot.f.4.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8p11.report.f.4.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8p12.plot.m.16.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8p12.report.m.16.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8p23.plot.f.13.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8p23.report.f.13.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8q11.plot.f.3.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr8q11.report.f.3.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr9q21.plot.m.4.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr9q21.report.m.4.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr9q34.plot.m.18.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chr9q34.report.m.18.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrXp11.plot.f.11.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrXp11.report.f.11.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrXp22.plot.f.1.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrXp22.report.f.1.txt

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inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrXq23.report.f.7.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrY.plot.m.1.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrY.report.m.1.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrYp11.plot.m.2.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrYp11.report.m.2.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrYq11.plot.m.3.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.chrYq11.report.m.3.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.global.plots.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.assignment.clustered.f.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.assignment.clustered.f.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.assignment.clustered.m.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.assignment.clustered.m.txt

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.assignment.f.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.assignment.m.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.genes.f.gct

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inst/extdata/ontology/GSEA/Gender_C1/Gender_C1.leading.overlap.m.jpeg

inst/extdata/ontology/GSEA/Gender_C1/Gender_C1_params.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ANDROGEN_GENES_FROM_NETAFFX.plot.m.15.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ANDROGEN_GENES_FROM_NETAFFX.report.m.15.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ANTI_CD44_UP.plot.m.10.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ANTI_CD44_UP.report.m.10.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.AR_MOUSE.plot.m.6.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.AR_MOUSE.report.m.6.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.AR_MOUSE_PLUS_TESTO_FROM_NETAFFX.plot.m.14.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.AR_MOUSE_PLUS_TESTO_FROM_NETAFFX.report.m.14.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.AR_ORTHOS_MAPPED_TO_U133_VIA_NETAFFX.plot.m.7.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.AR_ORTHOS_MAPPED_TO_U133_VIA_NETAFFX.report.m.7.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.CR_CAM.plot.m.11.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.CR_CAM.report.m.11.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.EMT_DOWN.plot.m.13.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.EMT_DOWN.report.m.13.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.GLUT_DOWN.plot.f.12.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.GLUT_DOWN.report.f.12.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.GNF_FEMALE_GENES.plot.f.2.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.GNF_FEMALE_GENES.report.f.2.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.GPCRs_Class_B_Secretin-like.plot.m.18.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.GPCRs_Class_B_Secretin-like.report.m.18.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.INSULIN_2F_UP.plot.f.5.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.INSULIN_2F_UP.report.f.5.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.Inflammatory_Response_Pathway.plot.m.17.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.Inflammatory_Response_Pathway.report.m.17.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.KRAS_TOP100_KNOCKDOWN.plot.m.5.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.KRAS_TOP100_KNOCKDOWN.report.m.5.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.LEU_DOWN.plot.f.8.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.LEU_DOWN.report.f.8.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.MAP00193_ATP_synthesis.plot.f.20.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.MAP00193_ATP_synthesis.report.f.20.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.MAP00650_Butanoate_metabolism.plot.m.2.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.MAP00650_Butanoate_metabolism.report.m.2.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.NFKB_REDUCED.plot.m.3.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.NFKB_REDUCED.report.m.3.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.Proteasome_Degradation.plot.f.7.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.Proteasome_Degradation.report.f.7.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.RAP_DOWN.plot.f.9.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.RAP_DOWN.report.f.9.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.SA_G1_AND_S_PHASES.plot.f.14.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.SA_G1_AND_S_PHASES.report.f.14.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ST_Dictyostelium_discoideum_cAMP_Chemotaxis_Pathway.plot.f.11.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ST_Dictyostelium_discoideum_cAMP_Chemotaxis_Pathway.report.f.11.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ST_T_Cell_Signal_Transduction.plot.m.19.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ST_T_Cell_Signal_Transduction.report.m.19.txt

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ST_Wnt_Ca2_cyclic_GMP_Pathway.plot.m.9.jpeg

inst/extdata/ontology/GSEA/Gender_C2/Gender_C2.ST_Wnt_Ca2_cyclic_GMP_Pathway.report.m.9.txt

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inst/scripts/create.db/topOnto.HDO.db/inst/scripts/prepare_parents.pl

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inst/scripts/create.db/topOnto.HDO.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.HDO.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.HDO.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.HDO.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.HDO.db/readMe

inst/scripts/create.db/topOnto.HDO.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.HDO.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.HDOOLD.db/DESCRIPTION

inst/scripts/create.db/topOnto.HDOOLD.db/NAMESPACE

inst/scripts/create.db/topOnto.HDOOLD.db/R/ONTClasses.R inst/scripts/create.db/topOnto.HDOOLD.db/R/createAnnObjs.R inst/scripts/create.db/topOnto.HDOOLD.db/R/zzz.R

inst/scripts/create.db/topOnto.HDOOLD.db/inst/DBschemas/schemas_1.0/DB.sql

inst/scripts/create.db/topOnto.HDOOLD.db/inst/NEWS

inst/scripts/create.db/topOnto.HDOOLD.db/inst/extdata/DB.sqlite

inst/scripts/create.db/topOnto.HDOOLD.db/inst/extdata/RSQLite_0.11.4.tar.gz

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/add_root.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/batch_run.sh

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/config

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/create.db.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/create_index.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/get_relationship.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/insert_data.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/prepare_obsolete.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/prepare_offspring.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/prepare_parents.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/prepare_synonym.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.HDOOLD.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.HDOOLD.db/readMe

inst/scripts/create.db/topOnto.HDOOLD.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.HDOOLD.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.HPO.db/DESCRIPTION

inst/scripts/create.db/topOnto.HPO.db/NAMESPACE

inst/scripts/create.db/topOnto.HPO.db/R/ONTClasses.R inst/scripts/create.db/topOnto.HPO.db/R/createAnnObjs.R inst/scripts/create.db/topOnto.HPO.db/R/zzz.R

inst/scripts/create.db/topOnto.HPO.db/inst/DBschemas/schemas_1.0/DB.sql

inst/scripts/create.db/topOnto.HPO.db/inst/NEWS

inst/scripts/create.db/topOnto.HPO.db/inst/extdata/DB.sqlite

inst/scripts/create.db/topOnto.HPO.db/inst/extdata/RSQLite_0.11.4.tar.gz

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/add_root.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/batch_run.sh

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/config

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/create.db.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/create_index.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/get_relationship.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/insert_data.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/prepare_obsolete.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/prepare_offspring.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/prepare_parents.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/prepare_synonym.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.HPO.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.HPO.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.HPO.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.HPO.db/readMe

inst/scripts/create.db/topOnto.HPO.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.HPO.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/DESCRIPTION

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/NAMESPACE

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/R/ONTClasses.R inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/R/createAnnObjs.R inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/R/zzz.R

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/DBschemas/schemas_1.0/DB.sql

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/NEWS

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/extdata/DB.sqlite

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/extdata/RSQLite_0.11.4.tar.gz

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/add_root.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/batch_run.sh

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/config

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/create.db.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/create_index.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/get_relationship.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/insert_data.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/prepare_obsolete.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/prepare_offspring.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/prepare_parents.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/prepare_synonym.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/readMe

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.RECTOMEPATHWAY.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.SET.db/DESCRIPTION

inst/scripts/create.db/topOnto.SET.db/NAMESPACE

inst/scripts/create.db/topOnto.SET.db/R/ONTClasses.R inst/scripts/create.db/topOnto.SET.db/R/createAnnObjs.R inst/scripts/create.db/topOnto.SET.db/R/zzz.R

inst/scripts/create.db/topOnto.SET.db/inst/DBschemas/schemas_1.0/DB.sql

inst/scripts/create.db/topOnto.SET.db/inst/NEWS

inst/scripts/create.db/topOnto.SET.db/inst/extdata/DB.sqlite

inst/scripts/create.db/topOnto.SET.db/inst/extdata/RSQLite_0.11.4.tar.gz

inst/scripts/create.db/topOnto.SET.db/inst/scripts/add_root.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/batch_run.sh

inst/scripts/create.db/topOnto.SET.db/inst/scripts/config

inst/scripts/create.db/topOnto.SET.db/inst/scripts/create.db.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/create_index.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/get_relationship.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/insert_data.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/prepare_obsolete.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/prepare_offspring.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/prepare_parents.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/prepare_synonym.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.SET.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.SET.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.SET.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.SET.db/readMe

inst/scripts/create.db/topOnto.SET.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.SET.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.SETFLAT.db/DESCRIPTION

inst/scripts/create.db/topOnto.SETFLAT.db/NAMESPACE

inst/scripts/create.db/topOnto.SETFLAT.db/R/ONTClasses.R inst/scripts/create.db/topOnto.SETFLAT.db/R/createAnnObjs.R inst/scripts/create.db/topOnto.SETFLAT.db/R/zzz.R

inst/scripts/create.db/topOnto.SETFLAT.db/inst/DBschemas/schemas_1.0/DB.sql

inst/scripts/create.db/topOnto.SETFLAT.db/inst/NEWS

inst/scripts/create.db/topOnto.SETFLAT.db/inst/extdata/DB.sqlite

inst/scripts/create.db/topOnto.SETFLAT.db/inst/extdata/RSQLite_0.11.4.tar.gz

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/add_root.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/batch_run.sh

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/config

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/create.db.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/create_index.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/get_relationship.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/insert_data.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/prepare_obsolete.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/prepare_offspring.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/prepare_parents.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/prepare_synonym.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.SETFLAT.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.SETFLAT.db/readMe

inst/scripts/create.db/topOnto.SETFLAT.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.SETFLAT.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.SETFLAT2.db/DESCRIPTION

inst/scripts/create.db/topOnto.SETFLAT2.db/NAMESPACE

inst/scripts/create.db/topOnto.SETFLAT2.db/R/ONTClasses.R inst/scripts/create.db/topOnto.SETFLAT2.db/R/createAnnObjs.R inst/scripts/create.db/topOnto.SETFLAT2.db/R/zzz.R

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/DBschemas/schemas_1.0/DB.sql

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/NEWS

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/extdata/DB.sqlite

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/extdata/RSQLite_0.11.4.tar.gz

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/add_root.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/batch_run.sh

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/config

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/create.db.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/create_index.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/get_relationship.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/insert_data.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/prepare_obsolete.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/prepare_offspring.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/prepare_parents.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/prepare_synonym.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.SETFLAT2.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.SETFLAT2.db/readMe

inst/scripts/create.db/topOnto.SETFLAT2.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.SETFLAT2.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/DESCRIPTION

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/NAMESPACE

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/R/ONTClasses.R inst/scripts/create.db/topOnto.SETSTRUCTURED.db/R/createAnnObjs.R inst/scripts/create.db/topOnto.SETSTRUCTURED.db/R/zzz.R

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/DBschemas/schemas_1.0/DB.sql

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/NEWS

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/extdata/DB.sqlite

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/extdata/RSQLite_0.11.4.tar.gz

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/add_root.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/batch_run.sh

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/config

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/create.db.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/create_index.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/get_relationship.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/insert_data.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/prepare_obsolete.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/prepare_offspring.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/prepare_parents.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/prepare_synonym.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/prepare_term.pl

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/inst/scripts/readme.txt

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTANCESTOR.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTBASE.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTCHILDREN.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTMAPCOUNTS.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTOBSOLETE.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTOFFSPRING.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTPARENTS.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTSYNONYM.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTTERM.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTTerms-class.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONTTermsAnnDbBimap.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/man/ONT_dbconn.Rd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/readMe

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/vignettes/my-vignette.Rmd

inst/scripts/create.db/topOnto.SETSTRUCTURED.db/vignettes/my-vignette.Rmd.bak

inst/scripts/create.db/topOnto.skeleton.db.tar.gz

inst/scripts/exampleBatch.R inst/scripts/exampleGSEA.R inst/scripts/exampleRun.R

install.sh

man/GOTests.Rd man/ONTdata.Rd man/annFUN.Rd man/classicCount-class.Rd man/classicExpr-class.Rd man/classicScore-class.Rd man/dagFunctions.Rd man/diagnosticMethods.Rd man/elimCount-class.Rd man/elimExpr-class.Rd man/elimScore-class.Rd man/getPvalues.Rd man/getSigGroups.Rd man/groupStats-class.Rd man/inducedGraph.Rd man/init.Rd man/parentChild-class.Rd man/printGraph-methods.Rd man/topGOdata-class.Rd man/topGOresult-class.Rd man/topONTdata-class.Rd man/topONTresult-class.Rd man/topOnto-package.Rd man/weightCount-class.Rd

topOnto.Rproj

vignettes/figure/10-1.png

vignettes/green_ckmark.png

vignettes/my-vignette.Rmd

vignettes/my-vignette.html

vignettes/my-vignette.md

vignettes/red_ckmark.png

hxin/topOnto documentation built on May 17, 2019, 9:15 p.m.