combineSNV_CNA: Combine mutation data from CNA and SNV

In hyginn/rete: Network Analysis for Cell- and Systems Biology

Description

combineSNV_CNA loads the vector of preprocessed dataset from filtered CNA or SNV files, creates hash keys corresponding to the input file type, combine the corresponding mutation count to each gene and save to a gX format file as output file.

Usage

combineSNV_CNA(fNameSNV, fNameCNA, fgX = "gX.rds", silent = FALSE,
  writeLog = TRUE)

Arguments

fNameSNV	A vector of path of fully qualifed filenames of CNA rds files.
fNameCNA	A vector of path of fully qualified file Names of SNV rds files.
fgX	The fully qualified filename/path of a gX output file, by default is gX.rds.
silent	Boolean option for writing combining process information to console, FALSE by default.
writeLog	Boolean option for log results, TRUE by default.

Details

Details.

Value

N/A. This function is normally invoked for its side effect of saving a gX file.

gX files

gX rds files contain data of SNV and CNA combined for each gene as one object, sorted per gene.

Examples

## Not run: combineSNV_CNA(fNameSNV="SNV.rds", fNameCNA="CNA.rds", fgX="data.rds")

hyginn/rete documentation built on May 17, 2019, 9:16 p.m.