fastMapGenerate: Generate the fastMap hash tables.
In hyginn/rete: Network Analysis for Cell- and Systems Biology

Description Usage Arguments See Also Examples

fastMapGenerate will parse through an HGNC file and create a hash table. Keys are the IDs found in unmappedColName and associated values are IDs found in HGNCSymbolColName. The type attribute of the hash table will be set to type. Hash table can be saved and can be loaded in future sessions. If there are conflicting keys or a tab delimited key, keep the first instance of the key or only store the first key respectively.

1 2	fastMapGenerate(fName, HGNCSymbolColName, unmappedColName, type, saveHashTable = TRUE, outputName)

`fName`	The path to the HGNC gene symbol data set.
`HGNCSymbolColName`	The column name of the HGNC symbol.
`unmappedColName`	The column name the unmapped symbol.
`type`	The type of the gene database of unmappedColName.
`saveHashTable`	Boolean whether to save the hash table as an rds.
`outputName`	The path to save the RDS.

fastMapSanity on acceptable keys and values.

Other fastMap functions: fastMapSanity, fastMapUpdate, fastMap

## Not run: 
fastMapGenerate("hgnc_complete_set.txt", "symbol", "uniprot_ids",
                type = "UniProt", outputName = "fastMapUniProt.rds")

## End(Not run)