devSNV.maf: SNV data.
In hyginn/rete: Network Analysis for Cell- and Systems Biology
Description
Format
Source
Examples
Description
A MAF formattted file containing TCAG OV carcinoma SNVs for 16
genes.
Format
A MAF formatted file with 15 rows and 32 columns:
- HUGO_Symbol
HGNC gene symbol
- ENTREZ_GENE_ID
ID
...
Source
https://tcga-data.nci.nih.gov/docs/publications/ov_2011/
Examples
1
2
3
4
5
6
## Not run:
system.file("extdata", "devSNV.maf", package="rete")
fPath <- system.file("extdata", "devSNV.maf", package="rete")
myMAF <- read.delim(fPath, skip = 1, stringsAsFactors = FALSE)
## End(Not run)
hyginn/rete documentation built on May 17, 2019, 9:16 p.m.
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Description Format Source Examples
Description
A MAF formattted file containing TCAG OV carcinoma SNVs for 16 genes.
Format
A MAF formatted file with 15 rows and 32 columns:
- HUGO_Symbol
HGNC gene symbol
- ENTREZ_GENE_ID
ID
...
Source
https://tcga-data.nci.nih.gov/docs/publications/ov_2011/
Examples
1 2 3 4 5 6 | ## Not run:
system.file("extdata", "devSNV.maf", package="rete")
fPath <- system.file("extdata", "devSNV.maf", package="rete")
myMAF <- read.delim(fPath, skip = 1, stringsAsFactors = FALSE)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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