Man pages for hyochoi/Scissors
| adj.center | Provide a center value adjusted by a lower bound |
| ADstat.hy | Provide the Anderson-Darling test statistic of standard... |
| ADstatWins.hy | Provide the winsorized Anderson-Darling test statistic |
| annotate_pileup | Annotating pileup |
| center_data | Centering data |
| detect_localout | Detect local shape outliers with a residual matrix |
| detect_onoffout | Detect local shape outliers based on a residual matrix |
| find.exon.hy | Finding exons and introns |
| generdir | written by – |
| get_offstat | Detect off local shape changes in residual matrix. |
| getShiftParam | Shift parameter |
| get_sparsePD4one | Determining the most outlying structure using sparse basis... |
| kdeplot.hy | kernel density function |
| len.intron.hy | Find intron length to be inserted |
| logtransform_data | Log-transforming data |
| miscGlobal | Detect global shape variants in RNA-seq data |
| miscLocal | Detect local shape variants in RNA-seq data |
| normalize_data | Normalizing log data |
| pd.rate.hy | Projection depth |
| plot_ScissorOS | Plot outlyingness scores with a kernel density estimate |
| plot_ScissorSC | Plot shape changes from SCISSOR |
| process_data | Processing data |
| RNAcurve | Plot RNA-seq curves |
| scale.factor | Obtain robust mean scale factors |
| Scissor | All-in-one function for identifying shape changes in RNA-seq... |
| weigh_data | Weighing data |
