adj.center | Provide a center value adjusted by a lower bound |
ADstat.hy | Provide the Anderson-Darling test statistic of standard... |
ADstatWins.hy | Provide the winsorized Anderson-Darling test statistic |
annotate_pileup | Annotating pileup |
center_data | Centering data |
detect_localout | Detect local shape outliers with a residual matrix |
detect_onoffout | Detect local shape outliers based on a residual matrix |
find.exon.hy | Finding exons and introns |
generdir | written by – |
get_offstat | Detect off local shape changes in residual matrix. |
getShiftParam | Shift parameter |
get_sparsePD4one | Determining the most outlying structure using sparse basis... |
kdeplot.hy | kernel density function |
len.intron.hy | Find intron length to be inserted |
logtransform_data | Log-transforming data |
miscGlobal | Detect global shape variants in RNA-seq data |
miscLocal | Detect local shape variants in RNA-seq data |
normalize_data | Normalizing log data |
pd.rate.hy | Projection depth |
plot_ScissorOS | Plot outlyingness scores with a kernel density estimate |
plot_ScissorSC | Plot shape changes from SCISSOR |
process_data | Processing data |
RNAcurve | Plot RNA-seq curves |
scale.factor | Obtain robust mean scale factors |
Scissor | All-in-one function for identifying shape changes in RNA-seq... |
weigh_data | Weighing data |
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