get_offstat: Detect off local shape changes in residual matrix.

Description Usage Arguments

Description

This function identifies off local shape changes based on window directions.

Usage

1
get_offstat(resmat, rawmat, exonset, winlength = 100, readconstr = 10)

Arguments

resmat

a residual matrix from PCA, a data matrix subtracted by a low-rank matrix.

rawmat

a raw coverage matrix, dataI from process_data

exonset

exon/intron annotation matrix from annotate_pileup

winlength

the window size. Default is 100.

readconstr

the minimum reads count required to be considered for on/off local shape changes. Default is 10.


hyochoi/Scissors documentation built on July 3, 2019, 4:48 a.m.