annotate_pileup: Annotating pileup

In hyochoi/Scissors:

Description

This function is used to get pileup data based on new transcript for the purpose of the downstream outlier detection analysis.

Usage

annotate_pileup(pileup, exon, input.type = "whole_intron",
  output.type = "part_intron", intron.len = NULL)

Arguments

pileup	raw coverage data
exon	exon
input.type	type of intronic region contained in pileup, with choices "whole_intron", "part_intron", or "only_exon"; the first is the default.
output.type	type of intronic region that will be included in output, with choices "whole_intron", "part_intron", or "only_exon"; the second is the default.
intron.len	a length of intronic region that will be included in output.

hyochoi/Scissors documentation built on July 3, 2019, 4:48 a.m.