# This file is automatically generated, you probably don't want to edit this
rmcOptions <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
"rmcOptions",
inherit = jmvcore::Options,
public = list(
initialize = function(
id = NULL,
dep = NULL,
covs = NULL,
rc = FALSE,
plot = FALSE,
width = 500,
height = 500,
cc = FALSE,
plot1 = FALSE,
width1 = 500,
height1 = 500, ...) {
super$initialize(
package="seolmatrix",
name="rmc",
requiresData=TRUE,
...)
private$..id <- jmvcore::OptionVariable$new(
"id",
id,
suggested=list(
"nominal"),
permitted=list(
"factor"))
private$..dep <- jmvcore::OptionVariable$new(
"dep",
dep,
suggested=list(
"continuous"),
permitted=list(
"numeric"))
private$..covs <- jmvcore::OptionVariable$new(
"covs",
covs,
suggested=list(
"continuous"),
permitted=list(
"numeric"))
private$..rc <- jmvcore::OptionBool$new(
"rc",
rc,
default=FALSE)
private$..plot <- jmvcore::OptionBool$new(
"plot",
plot,
default=FALSE)
private$..width <- jmvcore::OptionInteger$new(
"width",
width,
default=500)
private$..height <- jmvcore::OptionInteger$new(
"height",
height,
default=500)
private$..cc <- jmvcore::OptionBool$new(
"cc",
cc,
default=FALSE)
private$..plot1 <- jmvcore::OptionBool$new(
"plot1",
plot1,
default=FALSE)
private$..width1 <- jmvcore::OptionInteger$new(
"width1",
width1,
default=500)
private$..height1 <- jmvcore::OptionInteger$new(
"height1",
height1,
default=500)
self$.addOption(private$..id)
self$.addOption(private$..dep)
self$.addOption(private$..covs)
self$.addOption(private$..rc)
self$.addOption(private$..plot)
self$.addOption(private$..width)
self$.addOption(private$..height)
self$.addOption(private$..cc)
self$.addOption(private$..plot1)
self$.addOption(private$..width1)
self$.addOption(private$..height1)
}),
active = list(
id = function() private$..id$value,
dep = function() private$..dep$value,
covs = function() private$..covs$value,
rc = function() private$..rc$value,
plot = function() private$..plot$value,
width = function() private$..width$value,
height = function() private$..height$value,
cc = function() private$..cc$value,
plot1 = function() private$..plot1$value,
width1 = function() private$..width1$value,
height1 = function() private$..height1$value),
private = list(
..id = NA,
..dep = NA,
..covs = NA,
..rc = NA,
..plot = NA,
..width = NA,
..height = NA,
..cc = NA,
..plot1 = NA,
..width1 = NA,
..height1 = NA)
)
rmcResults <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
"rmcResults",
inherit = jmvcore::Group,
active = list(
instructions = function() private$.items[["instructions"]],
rc = function() private$.items[["rc"]],
plot = function() private$.items[["plot"]],
cc = function() private$.items[["cc"]],
plot1 = function() private$.items[["plot1"]]),
private = list(),
public=list(
initialize=function(options) {
super$initialize(
options=options,
name="",
title="Repeated & Cross Correlation",
refs="seolmatrix")
self$add(jmvcore::Html$new(
options=options,
name="instructions",
title="Instructions",
visible=TRUE))
self$add(jmvcore::Table$new(
options=options,
name="rc",
title="Repeated correlation coefficient",
rows=1,
refs="rmcorr",
visible="(rc)",
clearWith=list(
"id",
"dep",
"covs"),
columns=list(
list(
`name`="r",
`title`="Coefficient",
`type`="number"),
list(
`name`="df",
`title`="df",
`type`="integer"),
list(
`name`="p",
`title`="p",
`type`="number",
`format`="zto,pvalue"),
list(
`name`="lower",
`title`="Lower",
`type`="number",
`superTitle`="95% CI"),
list(
`name`="upper",
`title`="Upper",
`type`="number",
`superTitle`="95% CI"))))
self$add(jmvcore::Image$new(
options=options,
name="plot",
title="Scatterplot for Repeated Correlation",
renderFun=".plot",
visible="(plot)",
refs="rmcorr",
requiresData=TRUE,
clearWith=list(
"id",
"dep",
"covs",
"width",
"height")))
self$add(jmvcore::Table$new(
options=options,
name="cc",
title="Cross correlation values",
visible="(cc)",
clearWith=list(
"dep",
"covs"),
columns=list(
list(
`name`="lag",
`title`="Lag",
`type`="integer"),
list(
`name`="value",
`title`="Value",
`type`="number"))))
self$add(jmvcore::Image$new(
options=options,
name="plot1",
title="Cross Correlation plot",
renderFun=".plot1",
visible="(plot1)",
requiresData=TRUE,
clearWith=list(
"dep",
"covs",
"width1",
"height1")))}))
rmcBase <- if (requireNamespace("jmvcore", quietly=TRUE)) R6::R6Class(
"rmcBase",
inherit = jmvcore::Analysis,
public = list(
initialize = function(options, data=NULL, datasetId="", analysisId="", revision=0) {
super$initialize(
package = "seolmatrix",
name = "rmc",
version = c(1,0,0),
options = options,
results = rmcResults$new(options=options),
data = data,
datasetId = datasetId,
analysisId = analysisId,
revision = revision,
pause = NULL,
completeWhenFilled = FALSE,
requiresMissings = FALSE,
weightsSupport = 'auto')
}))
#' Repeated & Cross Correlation
#'
#'
#' @param data .
#' @param id .
#' @param dep .
#' @param covs .
#' @param rc .
#' @param plot .
#' @param width .
#' @param height .
#' @param cc .
#' @param plot1 .
#' @param width1 .
#' @param height1 .
#' @return A results object containing:
#' \tabular{llllll}{
#' \code{results$instructions} \tab \tab \tab \tab \tab a html \cr
#' \code{results$rc} \tab \tab \tab \tab \tab a table \cr
#' \code{results$plot} \tab \tab \tab \tab \tab an image \cr
#' \code{results$cc} \tab \tab \tab \tab \tab a table \cr
#' \code{results$plot1} \tab \tab \tab \tab \tab an image \cr
#' }
#'
#' Tables can be converted to data frames with \code{asDF} or \code{\link{as.data.frame}}. For example:
#'
#' \code{results$rc$asDF}
#'
#' \code{as.data.frame(results$rc)}
#'
#' @export
rmc <- function(
data,
id,
dep,
covs,
rc = FALSE,
plot = FALSE,
width = 500,
height = 500,
cc = FALSE,
plot1 = FALSE,
width1 = 500,
height1 = 500) {
if ( ! requireNamespace("jmvcore", quietly=TRUE))
stop("rmc requires jmvcore to be installed (restart may be required)")
if ( ! missing(id)) id <- jmvcore::resolveQuo(jmvcore::enquo(id))
if ( ! missing(dep)) dep <- jmvcore::resolveQuo(jmvcore::enquo(dep))
if ( ! missing(covs)) covs <- jmvcore::resolveQuo(jmvcore::enquo(covs))
if (missing(data))
data <- jmvcore::marshalData(
parent.frame(),
`if`( ! missing(id), id, NULL),
`if`( ! missing(dep), dep, NULL),
`if`( ! missing(covs), covs, NULL))
for (v in id) if (v %in% names(data)) data[[v]] <- as.factor(data[[v]])
options <- rmcOptions$new(
id = id,
dep = dep,
covs = covs,
rc = rc,
plot = plot,
width = width,
height = height,
cc = cc,
plot1 = plot1,
width1 = width1,
height1 = height1)
analysis <- rmcClass$new(
options = options,
data = data)
analysis$run()
analysis$results
}
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