Files in iagomosqueira/FLasher
Projection and Forecasting of Fish Populations, Stocks and Fleets

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
NEWS.md R/FLasherLib.R R/RcppExports.R R/accessors.R R/classes.R R/coerce.R R/constructors.R R/data.R R/fcb_draw.R R/fwd.R R/generics.R R/methods.R R/plot.R R/rcpp_plugin.R R/test_helper_functions.R R/utilities.R R/window.R README.md TODO.md
appveyor.yml
data/mixed_fishery_example_om.RData
docs/TODO.html
docs/articles/FLasher_intro.html
docs/articles/FLasher_mixed_fisheries.html
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotSRRs-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plot_sel_pattern-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex1-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex2-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex3-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex4-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex5-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex6-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex7-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/plotex8-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/unnamed-chunk-2-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/unnamed-chunk-3-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/unnamed-chunk-5-1.png
docs/articles/FLasher_mixed_fisheries_files/figure-html/unnamed-chunk-7-1.png
docs/articles/FLasher_plugin.html
docs/articles/FLasher_reference.html
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/FCB.html
docs/reference/FCBDrawing.html
docs/reference/FLCatch-cpp-tests.html
docs/reference/FLFishery-cpp-tests.html
docs/reference/FLQuant-cpp-tests.html
docs/reference/FLQuant7-cpp-tests.html
docs/reference/FLR-arithmetic-cpp-tests.html
docs/reference/FLStock-cpp-tests.html
docs/reference/FLasher.html
docs/reference/add_target_order.html
docs/reference/basicBlock.html
docs/reference/biolBlock.html
docs/reference/calc_F.html
docs/reference/catchBlock.html
docs/reference/coerce.html
docs/reference/draw-2.png
docs/reference/draw-FCB-1.png
docs/reference/draw-FCB.html
docs/reference/fcb.html
docs/reference/fcb2int.html
docs/reference/fillchar.html
docs/reference/fisheryBlock.html
docs/reference/fwd-methods.html
docs/reference/fwdBiol-cpp-tests.html
docs/reference/fwdControl-accessors.html
docs/reference/fwdControl-cpp-tests.html
docs/reference/fwdControl.html
docs/reference/fwdSR-cpp-tests.html
docs/reference/get_FLQuant_element.html
docs/reference/get_FLQuant_elements.html
docs/reference/guessfcb.html
docs/reference/index.html
docs/reference/inlineCxxPlugin.html
docs/reference/iters.html
docs/reference/make_test_operatingModel.html
docs/reference/match_posns_names.html
docs/reference/mixed_fishery_example.html
docs/reference/operatingModel-cpp-tests.html
docs/reference/operatingModelRun.html
docs/reference/parsefwdList.html
docs/reference/plot-1.png
docs/reference/plot.html
docs/reference/plugin-tests.html
docs/reference/profiling-cpp-tests.html
docs/reference/propagate-fwdControl-method.html
docs/reference/random_FLBiolcpp_generator.html
docs/reference/random_FLCatch_generator.html
docs/reference/random_FLCatches_generator.html
docs/reference/random_FLFisheries_generator.html
docs/reference/random_FLFishery_generator.html
docs/reference/random_FLQuant_generator.html
docs/reference/random_FLQuant_list_generator.html
docs/reference/random_fwdBiols_list_generator.html
docs/reference/random_fwdControl_generator.html
docs/reference/show-fwdControl-method.html
docs/reference/solver-cpp-tests.html
docs/reference/stf.html
docs/reference/summary.html
docs/reference/target.html
docs/reference/targetOrder.html
inst/include/FLCatch.h
inst/include/FLFishery.h
inst/include/FLQuant_base.h
inst/include/FLQuant_multidim.h
inst/include/FLStock.h
inst/include/FLasher.h
inst/include/cppad/base_require.hpp
inst/include/cppad/configure.hpp
inst/include/cppad/core/abort_recording.hpp
inst/include/cppad/core/abs.hpp
inst/include/cppad/core/acosh.hpp
inst/include/cppad/core/ad.hpp
inst/include/cppad/core/ad_assign.hpp
inst/include/cppad/core/ad_binary.hpp
inst/include/cppad/core/ad_ctor.hpp
inst/include/cppad/core/ad_fun.hpp
inst/include/cppad/core/ad_io.hpp
inst/include/cppad/core/ad_to_string.hpp
inst/include/cppad/core/ad_valued.hpp
inst/include/cppad/core/add.hpp
inst/include/cppad/core/add_eq.hpp
inst/include/cppad/core/arithmetic.hpp
inst/include/cppad/core/asinh.hpp
inst/include/cppad/core/atan2.hpp
inst/include/cppad/core/atanh.hpp
inst/include/cppad/core/atomic_base.hpp
inst/include/cppad/core/azmul.hpp
inst/include/cppad/core/base_complex.hpp
inst/include/cppad/core/base_cond_exp.hpp
inst/include/cppad/core/base_double.hpp
inst/include/cppad/core/base_float.hpp
inst/include/cppad/core/base_hash.hpp
inst/include/cppad/core/base_limits.hpp
inst/include/cppad/core/base_std_math.hpp
inst/include/cppad/core/base_to_string.hpp
inst/include/cppad/core/bender_quad.hpp
inst/include/cppad/core/bool_fun.hpp
inst/include/cppad/core/bool_valued.hpp
inst/include/cppad/core/capacity_order.hpp
inst/include/cppad/core/check_for_nan.hpp
inst/include/cppad/core/checkpoint.hpp
inst/include/cppad/core/compare.hpp
inst/include/cppad/core/compound_assign.hpp
inst/include/cppad/core/cond_exp.hpp
inst/include/cppad/core/convert.hpp
inst/include/cppad/core/cppad_assert.hpp
inst/include/cppad/core/define.hpp
inst/include/cppad/core/dependent.hpp
inst/include/cppad/core/discrete.hpp
inst/include/cppad/core/div.hpp
inst/include/cppad/core/div_eq.hpp
inst/include/cppad/core/drivers.hpp
inst/include/cppad/core/epsilon.hpp
inst/include/cppad/core/equal_op_seq.hpp
inst/include/cppad/core/erf.hpp
inst/include/cppad/core/expm1.hpp
inst/include/cppad/core/for_hes_sparsity.hpp
inst/include/cppad/core/for_jac_sparsity.hpp
inst/include/cppad/core/for_one.hpp
inst/include/cppad/core/for_sparse_hes.hpp
inst/include/cppad/core/for_sparse_jac.hpp
inst/include/cppad/core/for_two.hpp
inst/include/cppad/core/forward.hpp
inst/include/cppad/core/fun_check.hpp
inst/include/cppad/core/fun_construct.hpp
inst/include/cppad/core/fun_eval.hpp
inst/include/cppad/core/hash_code.hpp
inst/include/cppad/core/hessian.hpp
inst/include/cppad/core/identical.hpp
inst/include/cppad/core/independent.hpp
inst/include/cppad/core/integer.hpp
inst/include/cppad/core/jacobian.hpp
inst/include/cppad/core/log1p.hpp
inst/include/cppad/core/lu_ratio.hpp
inst/include/cppad/core/mul.hpp
inst/include/cppad/core/mul_eq.hpp
inst/include/cppad/core/near_equal_ext.hpp
inst/include/cppad/core/num_skip.hpp
inst/include/cppad/core/numeric_limits.hpp
inst/include/cppad/core/old_atomic.hpp
inst/include/cppad/core/omp_max_thread.hpp
inst/include/cppad/core/opt_val_hes.hpp
inst/include/cppad/core/optimize.hpp
inst/include/cppad/core/ordered.hpp
inst/include/cppad/core/par_var.hpp
inst/include/cppad/core/parallel_ad.hpp
inst/include/cppad/core/pow.hpp
inst/include/cppad/core/print_for.hpp
inst/include/cppad/core/rev_hes_sparsity.hpp
inst/include/cppad/core/rev_jac_sparsity.hpp
inst/include/cppad/core/rev_one.hpp
inst/include/cppad/core/rev_sparse_hes.hpp
inst/include/cppad/core/rev_sparse_jac.hpp
inst/include/cppad/core/rev_two.hpp
inst/include/cppad/core/reverse.hpp
inst/include/cppad/core/sign.hpp
inst/include/cppad/core/sparse.hpp
inst/include/cppad/core/sparse_hes.hpp
inst/include/cppad/core/sparse_hessian.hpp
inst/include/cppad/core/sparse_jac.hpp
inst/include/cppad/core/sparse_jacobian.hpp
inst/include/cppad/core/standard_math.hpp
inst/include/cppad/core/std_math_98.hpp
inst/include/cppad/core/sub.hpp
inst/include/cppad/core/sub_eq.hpp
inst/include/cppad/core/tape_link.hpp
inst/include/cppad/core/test_vector.hpp
inst/include/cppad/core/testvector.hpp
inst/include/cppad/core/unary_minus.hpp
inst/include/cppad/core/unary_plus.hpp
inst/include/cppad/core/undef.hpp
inst/include/cppad/core/user_ad.hpp
inst/include/cppad/core/value.hpp
inst/include/cppad/core/var2par.hpp
inst/include/cppad/core/vec_ad.hpp
inst/include/cppad/core/zdouble.hpp
inst/include/cppad/cppad.hpp
inst/include/cppad/local/abs_op.hpp
inst/include/cppad/local/acos_op.hpp
inst/include/cppad/local/acosh_op.hpp
inst/include/cppad/local/ad_tape.hpp
inst/include/cppad/local/add_op.hpp
inst/include/cppad/local/asin_op.hpp
inst/include/cppad/local/asinh_op.hpp
inst/include/cppad/local/atan_op.hpp
inst/include/cppad/local/atanh_op.hpp
inst/include/cppad/local/color_general.hpp
inst/include/cppad/local/color_symmetric.hpp
inst/include/cppad/local/comp_op.hpp
inst/include/cppad/local/cond_op.hpp
inst/include/cppad/local/cos_op.hpp
inst/include/cppad/local/cosh_op.hpp
inst/include/cppad/local/cppad_colpack.hpp
inst/include/cppad/local/cskip_op.hpp
inst/include/cppad/local/csum_op.hpp
inst/include/cppad/local/declare_ad.hpp
inst/include/cppad/local/discrete_op.hpp
inst/include/cppad/local/div_op.hpp
inst/include/cppad/local/erf_op.hpp
inst/include/cppad/local/exp_op.hpp
inst/include/cppad/local/expm1_op.hpp
inst/include/cppad/local/for_hes_sweep.hpp
inst/include/cppad/local/for_jac_sweep.hpp
inst/include/cppad/local/forward0sweep.hpp
inst/include/cppad/local/forward1sweep.hpp
inst/include/cppad/local/forward2sweep.hpp
inst/include/cppad/local/hash_code.hpp
inst/include/cppad/local/independent.hpp
inst/include/cppad/local/load_op.hpp
inst/include/cppad/local/log1p_op.hpp
inst/include/cppad/local/log_op.hpp
inst/include/cppad/local/mul_op.hpp
inst/include/cppad/local/op.hpp
inst/include/cppad/local/op_code.hpp
inst/include/cppad/local/optimize/cexp_info.hpp
inst/include/cppad/local/optimize/csum_stacks.hpp
inst/include/cppad/local/optimize/csum_variable.hpp
inst/include/cppad/local/optimize/get_op_info.hpp
inst/include/cppad/local/optimize/hash_code.hpp
inst/include/cppad/local/optimize/match_op.hpp
inst/include/cppad/local/optimize/old2new.hpp
inst/include/cppad/local/optimize/op_info.hpp
inst/include/cppad/local/optimize/optimize_run.hpp
inst/include/cppad/local/optimize/record_csum.hpp
inst/include/cppad/local/optimize/record_pv.hpp
inst/include/cppad/local/optimize/record_vp.hpp
inst/include/cppad/local/optimize/record_vv.hpp
inst/include/cppad/local/optimize/size_pair.hpp
inst/include/cppad/local/optimize/usage.hpp
inst/include/cppad/local/parameter_op.hpp
inst/include/cppad/local/player.hpp
inst/include/cppad/local/pod_vector.hpp
inst/include/cppad/local/pow_op.hpp
inst/include/cppad/local/print_op.hpp
inst/include/cppad/local/prototype_op.hpp
inst/include/cppad/local/recorder.hpp
inst/include/cppad/local/rev_hes_sweep.hpp
inst/include/cppad/local/rev_jac_sweep.hpp
inst/include/cppad/local/reverse_sweep.hpp
inst/include/cppad/local/set_get_in_parallel.hpp
inst/include/cppad/local/sign_op.hpp
inst/include/cppad/local/sin_op.hpp
inst/include/cppad/local/sinh_op.hpp
inst/include/cppad/local/sparse_binary_op.hpp
inst/include/cppad/local/sparse_internal.hpp
inst/include/cppad/local/sparse_list.hpp
inst/include/cppad/local/sparse_pack.hpp
inst/include/cppad/local/sparse_unary_op.hpp
inst/include/cppad/local/sqrt_op.hpp
inst/include/cppad/local/std_set.hpp
inst/include/cppad/local/store_op.hpp
inst/include/cppad/local/sub_op.hpp
inst/include/cppad/local/tan_op.hpp
inst/include/cppad/local/tanh_op.hpp
inst/include/cppad/local/user_state.hpp
inst/include/cppad/local/zmul_op.hpp
inst/include/cppad/utility.hpp
inst/include/cppad/utility/check_numeric_type.hpp
inst/include/cppad/utility/check_simple_vector.hpp
inst/include/cppad/utility/elapsed_seconds.hpp
inst/include/cppad/utility/error_handler.hpp
inst/include/cppad/utility/index_sort.hpp
inst/include/cppad/utility/lu_factor.hpp
inst/include/cppad/utility/lu_invert.hpp
inst/include/cppad/utility/lu_solve.hpp
inst/include/cppad/utility/memory_leak.hpp
inst/include/cppad/utility/nan.hpp
inst/include/cppad/utility/near_equal.hpp
inst/include/cppad/utility/ode_err_control.hpp
inst/include/cppad/utility/ode_gear.hpp
inst/include/cppad/utility/ode_gear_control.hpp
inst/include/cppad/utility/omp_alloc.hpp
inst/include/cppad/utility/poly.hpp
inst/include/cppad/utility/pow_int.hpp
inst/include/cppad/utility/romberg_mul.hpp
inst/include/cppad/utility/romberg_one.hpp
inst/include/cppad/utility/rosen_34.hpp
inst/include/cppad/utility/runge_45.hpp
inst/include/cppad/utility/set_union.hpp
inst/include/cppad/utility/sparse_rc.hpp
inst/include/cppad/utility/sparse_rcv.hpp
inst/include/cppad/utility/speed_test.hpp
inst/include/cppad/utility/thread_alloc.hpp
inst/include/cppad/utility/time_test.hpp
inst/include/cppad/utility/to_string.hpp
inst/include/cppad/utility/track_new_del.hpp
inst/include/cppad/utility/vector.hpp
inst/include/fwdBiol.h
inst/include/fwdControl.h
inst/include/fwdSR.h
inst/include/operating_model.h
inst/include/solver.h
man/FCB.Rd man/FCBDrawing.Rd man/add_target_order.Rd man/basicBlock.Rd man/biolBlock.Rd man/calc_F.Rd man/catchBlock.Rd man/coerce.Rd man/draw-FCB.Rd man/fcb2int.Rd man/fillchar.Rd man/fisheryBlock.Rd man/fwd-methods.Rd man/fwdControl-accessors.Rd man/fwdControl.Rd man/get_FLQuant_element.Rd man/get_FLQuant_elements.Rd man/guessfcb.Rd man/inlineCxxPlugin.Rd man/iters.Rd man/make_test_operatingModel.Rd man/match_posns_names.Rd man/mixed_fishery_example.Rd man/operatingModelRun.Rd man/parsefwdList.Rd man/plot.Rd man/propagate-fwdControl-method.Rd man/random_FLBiolcpp_generator.Rd man/random_FLCatch_generator.Rd man/random_FLCatches_generator.Rd man/random_FLFisheries_generator.Rd man/random_FLFishery_generator.Rd man/random_FLQuant_generator.Rd man/random_FLQuant_list_generator.Rd man/random_fwdBiols_list_generator.Rd man/random_fwdControl_generator.Rd man/show-fwdControl-method.Rd man/stf.Rd man/summary.Rd man/target.Rd man/targetOrder.Rd
src/Doxyfile
src/FLCatch.cpp
src/FLFishery.cpp
src/FLQuant_base.cpp
src/FLQuant_multidim.cpp
src/FLStock.cpp
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/fwdBiol.cpp
src/fwdControl.cpp
src/fwdSR.cpp
src/operating_model.cpp
src/solver.cpp
tests/fls.RData
tests/testthat.R tests/testthat/expect_funs.R tests/testthat/test-FLStock_projection.R tests/testthat/test-SRprojection.R tests/testthat/test-constructors.R tests/testthat/test-fwdControl-constructor.R tests/testthat/test-methods.R tests/testthat/test-mixed_fishery_projection.R vignettes/FLasher_intro.Rmd vignettes/FLasher_reference.Rmd
iagomosqueira/FLasher documentation built on July 18, 2018, 2:18 p.m.