filterClusters: Mapped cluster filter

In ibludau/clusterMapper:

Description

Filter mapped clusters by following criteria:

• Cluster must be main cluster of the transition group.

• Main cluster frequency must be >= min_main_cluster_freq.

• Main cluster should not be zero (non-defined).

Usage

filterClusters(table, min_main_cluster_freq = 0.6)

Arguments

table	data.table with original cluster information
min_main_cluster_freq	Numeric between 0 and 1. Minimum frequency of a transition group id matched to the same cluster. Default is 0.6.

Value

data.table Same as input table but including extra columns about run coverage information and filtered by min_main_cluster_freq.

Examples

data <- fullDataMapped
filteredData <- filterData(data,
                           min_main_cluster_freq = 0.6)

ibludau/clusterMapper documentation built on May 18, 2019, 9:17 p.m.