filterData: Coverage filter

Description Usage Arguments Value Examples

View source: R/filterData.R

Description

Filter input data by removing transition groups with a detection frequency < min_run_coverage.

Usage

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filterData(table, min_run_coverage = 0.6)

Arguments

table

data.table with original cluster information

min_run_coverage

Numeric between 0 and 1. Minimum coverage of a transition group id across all runs. Default is 0.6.

Value

data.table Same as input table but including extra columns about run coverage information and filtered by min_run_coverage.

Examples

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data <- exampleData
filteredData <- filterData(data,
                           min_run_coverage = 0.6)

ibludau/clusterMapper documentation built on May 18, 2019, 9:17 p.m.