Files in ibn-salem/genepair
Functions to Analyse Pairs of Genomic Elements like Genes.
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/GRangesFunction.R
R/genepair.R
R/genepairFunctions.R
R/genomicPairAply.R
R/randomization.R
README.md
data-raw/raw_data.R
data/ancGR.rda
data/datamat.rda
data/loopDF.rda
genepair.Rproj
man/addCor.Rd
man/addGeneAnnotation.Rd
man/addPairDist.Rd
man/addPairExp.Rd
man/addSameStrand.Rd
man/addSubTADmode.Rd
man/addWithinSubject.Rd
man/applyToCisPairs.Rd
man/applyToClosePairs.Rd
man/containsGenePairs.Rd
man/filterForCisPairs.Rd
man/genepair.Rd
man/getAllCisPairs.Rd
man/getCor.Rd
man/getPairAsGR.Rd
man/getPairAsGRL.Rd
man/getPairID.Rd
man/getPairIDsorted.Rd
man/getRandomPairs.Rd
man/interChromPairMatrix.Rd
man/noZeroVar.Rd
man/nonOverlappingGenePairs.Rd
man/pairNotNA.Rd
man/percentIncluded.Rd
man/samplePairsByWeight.Rd
man/uniquePair.Rd
man/uniquePairPerGene.Rd
man/uniquePairPerGeneBySim.Rd
man/weightsByBin.Rd
man/weightsByFactorFreq.Rd
tests/testthat.R
tests/testthat/test-applyToCisPairs.R
tests/testthat/test-applyToClosePairs.R
tests/testthat/test-genepairFunctions.R
