AnnotateAnchors: Add info to anchor matrix

In ibseq/scs-analysis: Tools for Single Cell Genomics

Description

Add info to anchor matrix

Usage

AnnotateAnchors(anchors, vars, slot, ...)

## Default S3 method:
AnnotateAnchors(
  anchors,
  vars = NULL,
  slot = NULL,
  object.list,
  assay = NULL,
  ...
)

## S3 method for class 'IntegrationAnchorSet'
AnnotateAnchors(
  anchors,
  vars = NULL,
  slot = NULL,
  object.list = NULL,
  assay = NULL,
  ...
)

## S3 method for class 'TransferAnchorSet'
AnnotateAnchors(
  anchors,
  vars = NULL,
  slot = NULL,
  reference = NULL,
  query = NULL,
  assay = NULL,
  ...
)

Arguments

anchors	An AnchorSet object
vars	Variables to pull for each object via FetchData
slot	Slot to pull feature data for
...	Arguments passed to other methods
object.list	List of Seurat objects
assay	Specify the Assay per object if annotating with expression data
reference	Reference object used in FindTransferAnchors
query	Query object used in FindTransferAnchors

Value

Returns the anchor dataframe with additional columns for annotation metadata

ibseq/scs-analysis documentation built on Feb. 27, 2021, 12:35 a.m.