BarcodeInflectionsPlot: Plot the Barcode Distribution and Calculated Inflection...
In ibseq/scs-analysis: Tools for Single Cell Genomics
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/visualization.R
Description
This function plots the calculated inflection points derived from the barcode-rank
distribution.
Usage
1
BarcodeInflectionsPlot(object)
Arguments
object
Seurat object
Details
See [CalculateBarcodeInflections()] to calculate inflection points and
[SubsetByBarcodeInflections()] to subsequently subset the Seurat object.
Value
Returns a 'ggplot2' object showing the by-group inflection points and provided
(or default) rank threshold values in grey.
Author(s)
Robert A. Amezquita, robert.amezquita@fredhutch.org
See Also
CalculateBarcodeInflections SubsetByBarcodeInflections
Examples
1
2
3
data("pbmc_small")
pbmc_small <- CalculateBarcodeInflections(pbmc_small, group.column = 'groups')
BarcodeInflectionsPlot(pbmc_small)
ibseq/scs-analysis documentation built on Feb. 27, 2021, 12:35 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/visualization.R
Description
This function plots the calculated inflection points derived from the barcode-rank distribution.
Usage
1 | BarcodeInflectionsPlot(object)
|
Arguments
object |
Seurat object |
Details
See [CalculateBarcodeInflections()] to calculate inflection points and [SubsetByBarcodeInflections()] to subsequently subset the Seurat object.
Value
Returns a 'ggplot2' object showing the by-group inflection points and provided (or default) rank threshold values in grey.
Author(s)
Robert A. Amezquita, robert.amezquita@fredhutch.org
See Also
CalculateBarcodeInflections SubsetByBarcodeInflections
Examples
1 2 3 | data("pbmc_small")
pbmc_small <- CalculateBarcodeInflections(pbmc_small, group.column = 'groups')
BarcodeInflectionsPlot(pbmc_small)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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