DietSeurat: Slim down a Seurat object

In ibseq/scs-analysis: Tools for Single Cell Genomics

Description

Keep only certain aspects of the Seurat object. Can be useful in functions that utilize merge as it reduces the amount of data in the merge.

Usage

DietSeurat(
  object,
  counts = TRUE,
  data = TRUE,
  scale.data = FALSE,
  features = NULL,
  assays = NULL,
  dimreducs = NULL,
  graphs = NULL
)

Arguments

object	Seurat object
counts	Preserve the count matrices for the assays specified
data	Preserve the data slot for the assays specified
scale.data	Preserve the scale.data slot for the assays specified
features	Only keep a subset of features, defaults to all features
assays	Only keep a subset of assays specified here
dimreducs	Only keep a subset of DimReducs specified here (if NULL, remove all DimReducs)
graphs	Only keep a subset of Graphs specified here (if NULL, remove all Graphs)

ibseq/scs-analysis documentation built on Feb. 27, 2021, 12:35 a.m.