SubsetByBarcodeInflections: Subset a Seurat Object based on the Barcode Distribution...
In ibseq/scs-analysis: Tools for Single Cell Genomics

Description Usage Arguments Details Value Author(s) See Also Examples

This convenience function subsets a Seurat object based on calculated inflection points.

1	SubsetByBarcodeInflections(object)

object

Seurat object

See [CalculateBarcodeInflections()] to calculate inflection points and [BarcodeInflectionsPlot()] to visualize and test inflection point calculations.

Returns a subsetted Seurat object.

Robert A. Amezquita, robert.amezquita@fredhutch.org

CalculateBarcodeInflections BarcodeInflectionsPlot

data("pbmc_small")
pbmc_small <- CalculateBarcodeInflections(
  object = pbmc_small,
  group.column = 'groups',
  threshold.low = 20,
  threshold.high = 30
)
SubsetByBarcodeInflections(object = pbmc_small)