TODO.md

In idot/deseq2analysis: DESeq2 analysis

for combined data

• correlation plots of normalised data independent of condition
• maybe heatmap of 500 most diff-exp across all samples
• UpSetR for comparisons > 2, else VennDiagram
• maybe plot of genes with 0 counts
• table with all parameters

for pairwise data

• heatmap
• PCA?
• entrez mapping statistics + GO mapping statistics, size of universe

general

• make gene.tab (ensembl) optional
• make groupings/comparisons more flexible

idot/deseq2analysis documentation built on Aug. 14, 2021, 5:12 a.m.