iferres/pewit: Microbial Pan-Genomics in R
This package provides a function for reconstructing a bacterial pangenome from a set of microbial genomes in gff3 format, and using a local copy of Pfam-A database. It attempts to group proteins with equal domain architecture, and then applies a tree prunning algorithm to split true orthologue sequences from paralogues.
Getting started
Browse package contents
Package details |
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| Maintainer | Ignacio Ferres <iferres@pasteur.edu.uy> |
| License | GPL-3 | file LICENSE |
| Version | 1.3.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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