API for iferres/pewit
Microbial Pan-Genomics in R

Global functions
align Man page Source code
assignOrphans Man page Source code
buildPanMatrix Man page Source code
checkIfParalogues Man page Source code
clusterOrphans Man page Source code
comp Man page Source code
coreAlign Man page Source code
determineOverlap Man page Source code
domainSearch Man page Source code
extractGffTable Man page Source code
extractSeqsFromGff3 Man page Source code
getClusterGenes Man page Source code
getCoreClusters Man page Source code
getFfnFaa Man page Source code
getSeqOfType Man page Source code
grouping Man page Source code
hmmBuild Man page Source code
hmmPress Man page Source code
maxTrueOGs Man page Source code
outhmmsearch Man page Source code
outphmmer Man page Source code
pangenome Man page Source code
pdist.aa Man page Source code
plot.pangenome Man page Source code
plotRarefaction Man page Source code
print.pangenome Man page Source code
processHmmsearch Man page Source code
processPfam_A_Dat Man page Source code
readTblout Man page Source code
realocateSingletons Man page Source code
rm_overlaping_clans Man page Source code
rmvRecentParalogues Man page Source code
runHmmsearch Man page Source code
runMCL Man page Source code
runOnExit Man page Source code
setClusterNames Man page Source code
splitAndWriteFastas Man page Source code
splitClusters Man page Source code
splitPreClusters Man page Source code
summary.pangenome Man page Source code
translate Man page Source code
whichNodeHaveRecentParalogues Man page
whichNodesHaveRecentParalogues Man page Source code
whichSubtreesAreTrueOrthologues Man page Source code
writeClusters Man page Source code
writeFastaClusters Man page Source code
writeParalogues Man page Source code
iferres/pewit documentation built on Oct. 18, 2017, 1:03 a.m.