README.md
In iferres/pewit: Microbial Pan-Genomics in R
Pewit: Pangenome Estimation - Walks Inside Taxonomy.
This is a beta version.
Installation
library(devtools)
install_github("iferres/pewit")
Dependencies
To work, it is required to have installed on your $PATH variable the following software:
* HMMER 3.1b2
* MCL
Other external dependencies
- Pfam-A database. The required files are:
Pfam-A.hmm.gz and Pfam-A.hmm.dat.gz. Remember to decompress (gunzip) those files before running the pipeline.
Note:
The PEWIT package has been designed and tested in UNIX-like platforms only.
Citation
"Pewit: Pangenome Estimation - Walks Inside Taxonomy"; Ignacio Ferres, Gregorio Iraola, Pablo Fresia, Daniela Costa.
https://github.com/iferres/pewit (2017, Development version).
iferres/pewit documentation built on June 22, 2022, 8:34 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Pewit: Pangenome Estimation - Walks Inside Taxonomy.
This is a beta version.
Installation
library(devtools)
install_github("iferres/pewit")
Dependencies
To work, it is required to have installed on your $PATH variable the following software: * HMMER 3.1b2 * MCL
Other external dependencies
- Pfam-A database. The required files are:
Pfam-A.hmm.gzandPfam-A.hmm.dat.gz. Remember to decompress (gunzip) those files before running the pipeline.
Note:
The PEWIT package has been designed and tested in UNIX-like platforms only.
Citation
"Pewit: Pangenome Estimation - Walks Inside Taxonomy"; Ignacio Ferres, Gregorio Iraola, Pablo Fresia, Daniela Costa.
https://github.com/iferres/pewit (2017, Development version).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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