Files in ilajaait/deephylo

Infer Parameters from Phylogenies with Deep-Learning

LICENSE.md R/data.R R/simulatePhylogenies.R R/summaryStatistics.R R/utils.R README.Rmd README.md data-raw/phyloBiSSE.R data-raw/phyloCRBD.R man/createEdgesDf.Rd man/createNodesDf.Rd man/createPhyloBiSSE.Rd man/createPhyloCRBD.Rd man/drawParamBiSSE.Rd man/drawParamCRBD.Rd man/drawPhyloSize.Rd man/extractLadders.Rd man/fillEdgesAll.Rd man/fillEdgesIndex.Rd man/fillEdgesIsExt.Rd man/fillEdgesLength.Rd man/fillEdgesParentChild.Rd man/fillEdgesPart.Rd man/fillNodesAll.Rd man/fillNodesColless.Rd man/fillNodesDepth.Rd man/fillNodesDist.Rd man/fillNodesIndex.Rd man/fillNodesIsTip.Rd man/fillNodesPart.Rd man/fillNodesStair.Rd man/getBranchLengthStats.Rd man/getChildLeftRight.Rd man/getHeight.Rd man/getImbalancedNodesProp.Rd man/getInLadderNodesProp.Rd man/getLadders.Rd man/getLttCoords.Rd man/getLttSlopes.Rd man/getMaxLadder.Rd man/getMaxWidthDiff.Rd man/getNodeColless.Rd man/getNodeStair.Rd man/getRoot.Rd man/getSackin.Rd man/getWidthDepthRatio.Rd man/initializeEdgesDf.Rd man/initializeNodesDf.Rd man/isInLadder.Rd man/isTip.Rd man/lttCoordsNames.Rd man/numberEdges.Rd man/numberNodesInternal.Rd man/numberNodesTotal.Rd man/numberTips.Rd man/phyloBiSSE.Rd man/phyloCRBD.Rd man/simulatePhylo.Rd man/simulatePhyloBiSSE.Rd man/simulatePhyloCRBD.Rd man/splitLttCoords.Rd man/sumStats.Rd man/sumStatsBranchLength.Rd man/sumStatsLtt.Rd man/sumStatsTopo.Rd man/writeLadders.Rd tests/testthat.R tests/testthat/test-simulatePhylogenies.R tests/testthat/test-summaryStatistics.R tests/testthat/test-utils.R