microclimate modelling with R

aerial_image | A 1 m resolution aerial image. |

airmasscoef | Calculates the airmass coefficient |

albedo | Calculates surface albedo |

albedo2 | Partitions surface albedo between ground and canopy albedo |

albedo_adjust | Adjusts albedo to correct for image brightness and contrast |

albedo_reflected | Calculates the mean albedo of surfaces surrounding each... |

arrayspline | Applies a spline function to an array of values |

basindelin | Delineates hydrological basins |

basindelin_big | Delineates hydrological basins for large datasets |

basinmerge | Merges adjoining basins |

basins100m | A raster of basins numbered as integers |

basinsort | Orders drainage basins by elevation |

cadconditions | Calculates whether conditions are right for cold air drainage |

canopy | Calculates canopy cover |

cfc | A 0.05º resolution dataset of hourly fractional cloud cover |

coastalNCEP | Calculates coastal effects from NCEP data |

coastalTps | Calculates coastal effects using thin-plate spline |

dailyprecipNCEP | Obtain daily precipitation from NCEP |

demworld | A 2.5º resolution dataset of elevations |

difprop | Calculates the diffuse fraction from incoming shortwave... |

difrad | A 0.05º resolution dataset of hourly diffuse radiation |

dnirad | A 0.05º resolution dataset of hourly direct radiation normal... |

dot-basinchars | Internal function used by basinmerge |

dot-bvarsrem | Internal function used by basinmerge |

dot-cadconditions2 | Cold air drainage direct from emissivity |

dot-difprop2 | Calculates the diffuse fraction from incoming shortwave... |

dot-emissivity | calculates emsisivity from humidity etc |

dot-fitsoil | Derives parameters for fitting soil temperatures |

dot-flowdir | Internal function used to calculate flow direction |

dot-get_sst | Downloads sea-surface temperature data |

dot-hgttongbr | Internal funcion to calculate whether neighbouring cell is... |

dot-integertobinary8 | Internal funcion to convert integer to binary |

dot-invls.auto | Calculates coastal exposure automatically |

dot-micro_ncep2 | Temporary NMR Function |

dot-onebasin_merge | Internal function to merge single basin |

dot-pointradwind | get radiation and wind for use with NicheMapR |

dot-propmaxrad | derived proportion of maximum radiation |

dot-shortwave.ts | get shortwave radiation (time series) |

dot-solarday | derived fraction of solar day |

dot-updown | Internal funcion to check whether neighbouring cell is higher... |

dtm100m | A 100 m resolution raster object of elevation for the Lizard... |

dtm1km | A 1 km resolution raster object of elevation for the Lizard... |

dtm1m | A 1 m resolution raster object of elevation for part of the... |

dtr | A 1 km resolution dataset of diurnal temperature ranges |

fitmicro | Fits micro- or mesoclimate model |

flowacc | Calculates accumulated flow |

get_dem | Gets raster of elevations |

get_NCEP | Obtains NCEP data required to run microclima |

globalclimate | A dataset of global climate variables |

habitats | A table of habitat types |

horizonangle | Calculates the tangent of the horizon angle |

hourlyNCEP | Interpolate NCEP data for running microclima to hourly |

hourlytemp | Derives hourly temperatures from daily data |

humidityconvert | Converts between different measures of humidity |

huss | A 1 km resolution dataset of interpolated daily specific... |

if_raster | Flexible conversion to raster object |

invls | Calculates land to sea ratio in upwind direction |

is_raster | Checks whether object is a raster and returns a matrix if yes |

julday | Calculates the astronomical Julian day |

lai | Calculates Leaf Area Index |

lai_adjust | Calculates Leaf Area Index for specified height above ground |

laifromhabitat | Derives leaf area index, leaf geometry and canopy height from... |

landsearatios | Inverse-distance weighted land-sea ratios in 36 directions |

lapserate | Calculates the moist adiabatic lapse rate |

latlongfromraster | Derives latitude and longitude of centre of raster object |

leaf_geometry | Calculates leaf orientation |

longwavetopo | calculates net longwave radiation above canopy |

longwaveveg | Calculates net longwave radiation below canopy |

mean_slope | Calculates the mean slope to the horizon |

mesofitdata | 2010 Data for fitting mesoclimate model. |

microclimaforNMR | Extract NCEP data and run microclima for use with NicheMapR |

microfitdata | May 2010 Data for fitting microclimate model. |

microvars | Climate variables for May 2010. |

modis | A ~500 m resolution dataset of MODIS-derived albedo values |

netlong100m | A 100 m resolution matrix of net longwave radiation |

netlong1m | A one metre resolution matrix of net longwave radiation |

netshort100m | A 100 metre resolution matrix of net shortwave radiation |

netshort1m | A one metre resolution matrix of net shortwave radiation |

pcad | Calculates cold air drainage potential |

pres | A 1 km resolution dataset of interpolated daily sea-level... |

runauto.ncep | Function for automatically generating microclimate surfaces... |

runmicro | Runs micro- or mesoclimate model |

shortwavetopo | Downscales shortwave radiation accounting for topographic... |

shortwaveveg | Downscales net shortwave radiation accounting for topography... |

siflat | Calculates the solar index for a flat surface |

skyviewtopo | calculates the proportion of sky in view |

skyviewveg | Calculates a sky view correction factor underneath vegetation |

solalt | Calculates the solar altitude |

solarindex | Calculates the solar index |

solartime | Calculates the solar time |

solazi | Calculates the solar azimuth |

suntimes | Calculates sunrise, sunset and daylength |

tas | A 1km resolution dataset of daily sea-level temperature |

temp100 | A 100 m resolution array of hourly reference temperatures. |

veg_hgt | A 1 m resolution raster object of vegetation height. |

wind1m | A one metre resolution matrix of windspeed |

wind2010 | Six-hourly wind speed at 10 m for 2010. |

windcoef | Calculates wind shelter coefficient |

windheight | Applies height correction to wind speed measurements |

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