## ---- include = FALSE---------------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
## ----setup--------------------------------------------------------------------
library(harmony)
library(ggplot2)
## -----------------------------------------------------------------------------
## Old
##
## HarmonyMatrix(bos, opt.args = list(lambda = c(0,1)))
## -----------------------------------------------------------------------------
## Source required data
## data("celllines")
## cell_lines <- zeros()
## pbmc <- CreateSeuratObject(counts = , project = "jurkat", min.cells = 5)
## Separate conditions
## pbmc@meta.data$stim <- c(rep("STIM", ncol(stim.sparse)), rep("CTRL", ncol(ctrl.sparse)))
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