In immunomind/immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

knitr::opts_chunk$set(echo = TRUE)
knitr::opts_chunk$set(fig.align = "center")
knitr::opts_chunk$set(fig.width = 12)
knitr::opts_chunk$set(fig.height = 6)

library(immunarch)

In order to make the visualization process easier, we developed a Shiny-based tool called FixVis. It is distributed with the immunarch package. To run FixVis just apply it to any ggplot2-based plot, including those from the immunarch's vis function. It works perfectly for every plot. FixVis can work only with one plot at a time.

Here is an example of how to run FixVis with vis function from immunarch. First, the plot is generated by vis function from immunarch and then FixVis is applied:

data(immdata)
gu <- geneUsage(immdata$data)
p <- vis(gu)
fixVis(p)

If you want to test it, run fixVis with no arguments; it will use the diamonds data for visualisation:

fixVis()

For your convenience we published a FixVis instances that are available online here. Also, a quick overview of FixVis is embedded below:

knitr::include_app("https://immunomind.shinyapps.io/fixvis/", height = "800px")

immunomind/immunarch documentation built on March 20, 2024, 12:01 p.m.